MmuINT0110596 @ mm10
Intron Retention
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56361112-56361851:-
Coord C1 exon
chr19:56361654-56361851
Coord A exon
chr19:56361217-56361653
Coord C2 exon
chr19:56361112-56361216
Length
437 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGGTGACATTTCTCCTGCAGCTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTTGAATATAAGAAAGGGTTTGAGGAGAGTAAAACCCACTTTAACCTGCCCATGGACATGGTGAACCTCAGGCACGCTAAGAAGGCCCAAGCTCTTGCCAGTGACCTTGACTACAGAAAGAAACTGCATGACTACACGGTGCTGCCTGAAGATATGAAAACTCAGTGGGCCAAGAAAGCCTACGGGCTGCAGAGCGAG
Seq A exon
GTGAGTGGCCCAGCACCTTGCCCTCAGATGAGCTCTCAGAGTGATTTGAACCTGTGAGTGGGTCCATTGTATAACTCAGAGAAGATCTATAGCTGTAACAGGTCCAGGATAGACAGGTGTAGAGAGACAAAGAGCCAAGACAGTGTAAACTCAGGATGGGGCGGGGCTTGGAGCTAGTGTGAAAGTCAAGATGGGCTGGCAACAAGAGCCAAGGAGAAACATCTTGGAAACATTGGTCAATTTTGGCAAGGTCAAAGTGTTTCAGCAGGAAGGTGGAATGTGTTCATTTCCATCGCAGGGAGCACCCAGTGGCCTTCCCTCCCTAAGGGAGACAAATGGGGAGTGGCTTTCTGGGAAGACATTTTGGATGTTCCCATGAACTTGGTTATGTCTGTCTGTGTATGTCAGATTAGAGCTTGGTGACATTTCTCCTGCAG
Seq C2 exon
CTGCAGTACAAAGCTGACCTGGCATGGATGAGGGGAGTCGGGTGGCTGACAGAGGGGAGTCTCAACCTGGAACAGGCGAAGAAGGCTGGACAGCTCATCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134:ENSMUST00000073536:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAATATAAGAAAGGGTTTGAGGA
R:
CTCGCTGATGAGCTGTCCAG
Band lengths:
303-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types