BtaINT0104849 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101397158-101398719:+
Coord C1 exon
chr11:101397158-101397233
Coord A exon
chr11:101397234-101398640
Coord C2 exon
chr11:101398641-101398719
Length
1407 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATGTTTTCCTCCTATTACAGGGA
3' ss Score
9.98
Exon sequences
Seq C1 exon
TTCTTCAGGGCCGTACTCTGCAGCCAAAACGCCTCACCCGGTGTTGACTCCAGCGCCTGCCAACCAAGCTAAGCAG
Seq A exon
GTAAATTGCTGATTTTTGCTTTGCTAATGTGACATGCAGTGACTGTCCTTGTAACTGAAGACAATCTGGTACTAAGTCCCCGCACTGTTTATTTTTTATTTACTTTAAAAAATTTTTCCCACGTCTTTTAAATAAACTCTGAAAAAAACCTGTGATCCTTTCCCCACAATTTATGACGGTTTTGAGCTAGTAGGTCAGTCAGGACCCGATGATGTCTTTGTTGACCATGTAATATTCTGCATCTGGTAATCTTGGGTCATAATTCTCTGTATGGAGGGTATCTGTATGGAGTTCAAGTTTACTTTCATTTGTCTTAGTTAACCCATACAACAGCCATATAGACAAGACAGATGTTCAGCTACGTTTCACTAATGAAGAAACCAGGGCTCAAGTGACTGACGCAGGCTTCCACCGGTAGTGAATGATGGAACCAGGGCTGGAACCCATCTTCCAGCTTCTCCCTGCCCACTGCTTTGTTCATTGGACCTTTCAGTATCAGCCTCCAGGGAACAGAGTCTTCTGCTTTCTCCTATCATCCCTGTTTTTCATACTTTGCATCTTCAATGATGTTTGTTATGTCTACTTGCAGGCTTTTGCCTGATAAACATGGTCTCTTACAAAAATAGGTTATATTGTAGACACTTAAACAATCCAGAAAAAAATAATAGGAGATGGCGGAAAGGCAGATCAAGCCCTCTCTGAAACTTTCCCTAAAAAAACCTGGTTTCTCTGCTACTCAACTCCGTCTCTAGAAAGGTCATTTTAGACTGTGTTTGAGATTGACCCTCAGAACTTGCCTAATGTGAGTTCTCAGACGTGGCCGTCTCCTCCGTAGTTTGCCCTGACTTAACATGGCGCTTCAGCAGTTCTCAGACGTGGCCGTCTCCTCCGTAGTTTGCCCTGACTTAACACGGCACTTCAGCAGTTGGCACTGGTCTTTCTCCTGGAGCTTCCCATCTTCACCTTGGAGGACACGTGGCGAGGCACAAATCGTAACAAACAAGAGAAAAAGAACACTGACTGGAGATGGAGAAGTTGGGCAGTTTGGCTTCTTAACCTTACTATAAGTTTTGTTGAGAGCCAGGATGTATTTCATTCATTTACTTCTTCCTTCATTTGTGTTTCAAACACACTGATGCCTTTCATGTGCTGAGCAGTGCGTTAGGCGCTGCGGAAGGAACTGCAGGCTCGGCAAGCAGGACCCTGTATTCTTGTGCTTGTGGAGTATCCCCATCTCTGAAGTGATATTACATTTAAACATACTGACCTAAATTGAAACTGAAGAACAAAATTTAACTAAATAGAAGTGTTTGTGCTTGCTTATTTTAAATTATGTTATCATTTCACATGTTCCTTTATTCCAGAGACTGTTTTGTAGGTCACATAAATGTTTTCCTCCTATTACAG
Seq C2 exon
GGATCGCTAATAAATGCCCTAAAGCCATCTGGGCCCCCGCCAGCATCCAGTCAGTTGTCATCTGGTGATAAAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896:ENSBTAT00000029190:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development