HsaINT0117091 @ hg19
Intron Retention
Gene
ENSG00000126883 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:8064]
Coordinates
chr9:134062676-134064518:+
Coord C1 exon
chr9:134062676-134062751
Coord A exon
chr9:134062752-134064439
Coord C2 exon
chr9:134064440-134064518
Length
1688 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTGCTTGCATTCTGTTATAGGGG
3' ss Score
9.05
Exon sequences
Seq C1 exon
TTCTTCAGTGCCCTACTCCACAGCCAAAACACCTCACCCAGTGTTGACCCCAGTGGCTGCTAACCAAGCCAAGCAG
Seq A exon
GTAACTTACTGATTTTTACTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGTCGCCCAGGCTCAAGTGCAGTGGTGCGATCTTGGCTCACCGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCGTGGCTCAGCCTCCTGAGTAGTTGGGATTACAGGCACCCACCACCATGCCCAGTCAATTTTTGTAGTTTTAGTAGAGACGCGGTTTCACCGCGTTGGCCAGGCTAGTCTCGAGCTCCTGACCTCAGATGATCCATCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTACCCGGCCTGAGTTTTACTTTTAACATTCATGCCGTGTCTGTCTTTGTAAGTGAAGACCATACTGTTTTTAAGTCTTGACTTTGTTTAAATGAACCATAAGTCTGATAAAGGCCCATAATCCCTTCCCCACAATTTATGCCAGTCTTGACATGGCTGTTAATCAGGGTAGGTCAGTCAGGACCTGATACTGTCTTCATAGGCCATTTAAACATTCTGCACCTAGTAATTTGGGGTCATAATTCTAATACCATACATTTTTATATGAAGTATTTTGCTTTGCAGTTTACTTTCACATTATCTCAGTTAACCCATACAACAGCCGTGTACAGTGGGAGGATAGGTGTTTAGATATGTCTCACTGGTGAGGCAGCCTAGGCTTGAGTGACCAACGCAAACTCTCACGATTAGTAAATGGTGGAACCAGAGCTGGGACCCAAGGCTTCTGACTTCCTCCTGTCCATTGCTCGTTTCACTACACAGTTGAGTATCAATGTCTGGGGTATAGGTTATCTGGTTTTCTCCTGCAATCCCTGTTTGTCAGAGTTTGCATATTTTTAGTGATGTTATGTCTAGCTTGTCTAGCTTCAGGCTTTTGCCTGATAAACATTGTCCCTTAGAAAAATAGGTGATATTGCAAACAGTTAAACAATCCAGAAAAAAGTGATAGGGGATGGTTGGAAGGTCAGTCAGGCTAGTGCTGAAACTCTTCCTAAGAAGTTCTGGTTTCTCTCACTACTCTTACATCTGTCTCTGAGATGAGTAGTTTGTGTTAGAGATCAGAATTTGAGACTGGATATCAGGACTTGCCTATTTAAGTTCTCAAACTTGCCTCTGTTCCTTAGTTTACCATAACTTAAAATGGCATTTAAGCATTTAGCATTCGATCTTTCTTCTGGAGGTATTTGTGTTCACCATGGAAAACACATGATAAGGCATAAGTCATGGCGAGTGAAGGAACATTGACTGGAGATGGATAAGTCAGTTTTGCTTTTAACCTTATTGTACATGCTTTGAGAGCTAGAACCATTTTATTAATTTACTCCTTCATTAATTCATCTACCTAATAGTCAAGTGCTTTTGATGTGCTAAGCACTGTGCTAGGCACTGGGAAGATAGCCATGAACTAGGCCAGTGTGACTGCCTTCTTGGAGCTTGCAGAGTATTTCTATTTTCATCCTTTAATATGATCTTACATATGGTTAACTTAAATTGAGACCTTTTTTTTGTTTCCTTTTTCTTTTTGGTAATTTATCTAAAAGTATTTGTCCTTGCTTATTTTAAATTATATTTTTGTGTTTACATTTTACATATTTCTTTGTTACAAAGAATGGTTAGTGGTTTAACATAAACATTTTGCTTGCATTCTGTTATAG
Seq C2 exon
GGGTCTCTAATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCGGTCAGTTATCATCTGGTGACAAAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126883-NUP214:NM_005085:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)