MmuINT1024676 @ mm10
Intron Retention
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32025243-32026926:+
Coord C1 exon
chr2:32025243-32025318
Coord A exon
chr2:32025319-32026847
Coord C2 exon
chr2:32026848-32026926
Length
1529 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTTCTTGTGTTCTGTACAGGGG
3' ss Score
9.63
Exon sequences
Seq C1 exon
TTCTGCCGTGCAGCACTCAGCAGCCAAAACACCCCATGCTGTGTTAACCCCCGTGGCTAACAGCCAAGCCAAGCAG
Seq A exon
GTAACTTGCTGATGTATTCTTTAGCAATATGTCTCTAACTGAAGATCATTTTATGATTTTCCTTCATTTAAATGAATGTGATTCTTAGAAAGGGCTGACACTTCTTTTCCATAACTCATGCCAGTCCTGACATGGTTAACCTGTTGAGGCCATTGACTTTCTAGACTCGTCATCTTAGGGCATGTGCTAACAGAATGCTTTTGGATGAGATGTTTAGTTTGCCATTTGTTTTGTTTTTCTTTTCTTTTTTTCTTTTTCTTTTTTCTTCCCCCCCCCCCCCCAGACACGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACCGCCTGGCTTTTGTTTTGTTTTTCTTAACATTGTCTCAGTACTGACTTGTGCAGTAGGTATTTAGATATGTCTCTTTTGAGGCAGCCGAGGTCAGGTGAGTTACATGGGCTCATCCAGTCAGTTATTGATAGAAGCAGCTGGGAGCCAAGGCTGAACGATCTGCCCTTTGCTTCTCCCACCGCACTGTTGGAAATGGGTTTCGGGTATGGATTGTCTTACTTTACTGCTGCAGCTCTGCCTTTCAGAGGTTGCATGCTTTTGGTGATGTGTCTAGCTCTGACTTTTGATTGATTGTAAGCAGTTAAACAGTGAAAAAGAAAATAATAAAGAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCGAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAAATAAATAAAAAAAAAATTAAAAAAAAAAAAAAAAAAGAAAATAATAAAGAAAGCAGTGGGGTGTGTGTGAATTAGGAGGAGGCTAGAAGGGAACCCAAGCTATCTCTGGAGCTTTCCCAGCAGTCCTGTTTCTCTTAGATCTGTCTTGGAGATGAGCAGCCTTAGATTGCACTTGAATCCAGAGTTTGAGACTGCACCATTAGCTGCCGGCTGTGGGTTCCCACACCATCCTGTGCCTCTGTTCCCCATGGAGGATGGTAGTAGGTCATACAGCGGCAGGGGTGCTGGCTGCAGGTGGAAAGCCCGGTTGCTTCTCCTGCTCACTAATTGCTGGGACTGTGTTCTTCATCCACCCATCCCGTCCTCTAACAAGTACTCAAGTGCCATTTATGTGGCAGACACTGTACTAGGTACCGAGAAGTCAGCCATGAGTCATGCAGAAGCCTCCAGTGTGGTGTTATATTTTGTTATTTTTCTATTCCTCCTTTTCATGGGTAATTAAACTGAATTCAAGTATTCGAGTTTGCTGGGTTTATGTTTTTACATTTCCGTTTCAGACGTTCACTTATCCCAAGGATAATTAGCAGTTTACCATAAATGTTTTTCTTGTGTTCTGTACAG
Seq C2 exon
GGGTCTCTGATAAATTCTTTCAAGCCGTCAGGACCCACAGCAGCATCCTGTCAGCTGTCCTCTGGGGATAAAGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855:ENSMUST00000065398:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types