GgaINT0125192 @ galGal4
Intron Retention
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6113839-6114629:+
Coord C1 exon
chr17:6113839-6113914
Coord A exon
chr17:6113915-6114584
Coord C2 exon
chr17:6114585-6114629
Length
670 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AGCATCTTTGTGTTTTTTAGACA
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTCATCAGTTCCTCACTCTGCAGCCCAGGCAGTCCACCAAGTTCTGGCAAGTGTTGCTACAAATCAGGCTAAGCAG
Seq A exon
GTATCTTGATACAGAGCTTTCCCTGTGGTGTGCCATGCCCAGACATGTTAAATACAGTTCGGGGTTTAGTTGTTGGTGAACAGGTCATCTAACAGTCTCTTTTTACAGCTTGCCCTATATCCTTGGCAGACTGTTTAATTATCTGTGACCTAGGTTTATTTTTATGTCTTGCCTTTTCTCACTTTTGAAGACTCTCGCAGCTTTTCAGTGGTTAACAGTCTTGCAACAGTAAGGGTTGCAGCTAACAACAAAGGAAATGGTGTTAGGTAAATATACTCAAATCTCACCAAAAAGAAGTGTGAGGCTGTCAAGGCGAAGAGTTGTTTCCCCATCCTGCATCTTACTGAAATCATTTCTTATTGATGGGCAAGTTGCTAAGTTTTATGGCAGCACACTGGAAAACCATGCAATGGTCTCTTTCCCCTGGAGTCACTGAGCTGTTGCACATGGAGGTTTGCTGGCCTCTGAAAGAGACTTGTTGAAAAAGTTGAATTAAGCAGCATTTAAATGTCCAGATGTAAAGAGCCCAAAATTGAAGGGTGCTGCCAAGTACTTTGACCACCTTCCTCTTATTTGTTATGCATGACTTTTGTAATATCAGACCAAGATCAGAAGGACCTTTTGTCAATGTGCAAACTGCATTGACTTAAAGCATCTTTGTGTTTTTTAG
Seq C2 exon
ACACCTCAAACAAGCTCACTTAAGGGACAGGCTCCACCTTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830:ENSGALT00000006070:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]