RnoINT0104358 @ rn6
Intron Retention
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11035944-11037170:+
Coord C1 exon
chr3:11035944-11036019
Coord A exon
chr3:11036020-11037091
Coord C2 exon
chr3:11037092-11037170
Length
1072 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTTCTTGTGTTCTGTACAGGGG
3' ss Score
9.63
Exon sequences
Seq C1 exon
TTCTTCTGGGCCGCACTCAGCAGCCAAAGCCCCCCATGCAGTGTTAACCCCAGTGGCTGCCAGCCAAGCCAAGCAG
Seq A exon
GTAACTTACTAATGTGTTCTTTAGTTGTTTGTCTCAGTAACTGAAGGTCATTTTATGATTTACTTCATTTAAATGAGCATGATTCTTAGAAAGGGCTGTTGCTTCTTTTCCATAACTCATGCCAGTCTCGACCTGGTTAACCAACTGAGACCATTGACTTTCTGACTCGCCATCTTAGGCCCCATAGGAAGAGAATGCTTTTGGATGAGATGTTAGTTCGCCCTTTGTTTCTTTTTAACATCTCAGTCCATGCAGCTGACTTGTACAGTAGGTGTTTAGATGTGTCCCTGAGGCAGCCGAGGTCAAGTGACTCCTGTAGGCTCATGCAGTCAGGTATTGATAGAGACAGCAGGGACCACGGCTGACCGATCTGCCCTTTGCCACCCCCACCGCACTGTTGGCAGTGGGGGTTGGGTATGGACAGTCTATCTTCTGCAGCTCTGCCTTTCAGCCTGGCATGCTCTCAGTGACTCAGTGATGTGTCTAGCTCTGACTTTTGGCTCATTGTGAGCAGTTAAGACAGTGAAAAAGAAAATAATAAAGAAAGCGGGAAGTGGGGGTAGGGGTGGTTGAATTAGGGGAGGCTGAAGGGAACCAAGCTGTCTCTGAGGCTTTCCCAGCAGGCCTGCTTCCTCTCAGGTCTGTCTGGAGATGAGCAGTTTTAGATTGCACTGGAATCCAGAATTAGAGACTGCACCATTAGCTGCCGACTGGGGGTTCCCAACACCATCCTCCATGGAAGGCGGATAGTAATTCACTCACGCAGCAGAGCAGGAAAGGCAGGTGGAGGTGCAAAGCCCAGGTGGTTGTCCTGCTCTCGGTTGTAAACTCACTAATTGCTGGGACTGTTTTCTTCATCTGCCCATCCAGTCCTCTACCAAGTATTCTAGTACCATGCATGTGGCAGACACCGCACTAGGTACTGAAAAGTCAGCCATGAATCACGCAGTAATTAGACTGAATTCAAGTATTTGTGGTGTTTGCTTAGTTTATGTTTTTACGTTTCCGTTTCACATGCTCACTTACTCCAAGAATAACAGTTTAACAAATGTTTTTCTTGTGTTCTGTACAG
Seq C2 exon
GGGTCTCTGATAAATTCCTTCAAGCCGTCAGGACCCACACCAGTGTCCTGTCAGCTGTCCTCTGGGGATAAAGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393:ENSRNOT00000037164:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]