BtaINT0105545 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009348 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr28:29078584-29079823:+
Coord C1 exon
chr28:29078584-29078958
Coord A exon
chr28:29078959-29079715
Coord C2 exon
chr28:29079716-29079823
Length
757 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TCATCTTTATCCTTCCATAGATT
3' ss Score
9.86
Exon sequences
Seq C1 exon
CCCTAGACCCTTGTTCTGCTTACATCAGTCTGAACGAGCCATGGAGGAACACTGAGCACCAATTCGATGAGTCTCGAGGTTCCCCTCTATGTGACAACAGTGTGGACGGGGAGTGGTACCGCTTCACAGGCATGGCAGGGGATGCTATGCCCACCTTCTGCATACCGGAAAACCACTGCGGAACCCATGCACCTGTCTGGCTCAATGGCAGCCACCCTCTGGAAGGTGATGGCATTGTGCAACGCCAGGCCTGCGCGAGCTTCAACGGAAACTGCTGCCTATGGAACACCACCGTGGAGGTTAAGTCCTGCCCTGGAGGCTACTATGTGTATCGTCTGACCAAGCCCAGCGTCTGCTTTCATGTCTACTGTGGTC
Seq A exon
GTGAGTACTTCCCTGGGCTCTTTCCCCTCCCCTCAAAGGCCACAGAAATGGCATCAAAGAGAAGAGTGCCATAGGAAATTCTGTTGTGGTAGTATCTCAGCACCTGAAGAACATTGATTTAGGAGCACAGATATCTCTAGCTCATGATTTCTGGGGTCTGCTCTTAAGATTTATGAAAAATTCCTAAGAATAGAAAGGGAAGAGAGCTATGACTTTGATCAGTTTTGTCTTTTATGTAATTTAGTGTGGATTTCCAACCTTGCTGAGCACGGAAGACCCCTTCTTTAGATATATTTCAGACATCCATATGGTAGCATTGTGCTTAGTATCCATTGATATTTTTTAGAAATGATGTATAATGGGAAGAAGCTACTTGAGATCAGTAATACTTTCAAATGAATTTTCATGTTATTAATCCCATCAAAATCTGTATACATTTTAAAAATAGACTGCATAGAAGAGTAGAACATAATACTATTTAATCTACAGCTCATGTTTGGTGAGGTTTTGGAGAAAACACCAGGGTCACCCAGGGCTGTGGATCTGAAGTTAGGACTCACGGATCTCAATGACAGAACATGCCCATGCCCTGCACAGTACCTCTTGCCAGTGGGTTATATAAAGCCAGAACAGTGAGAATTCTCTTGATGTTGATTAGGAATTCATACCCCGTAATTGAACTCATGAGGCTTTCTCATGGATGAGAGTGTCCTCTGACCCTCGCCCCTCATGAAAGGTCATCTTTATCCTTCCATAG
Seq C2 exon
ATTTTTATGACATCTGTGATGACGACTGCCATGGCAGCTGCCTGGGTACCAGTGAGTGCACATGTGCTCCAGGAACCGTGCTCGGCCCCGACAGACAGACATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009348:ENSBTAT00000063296:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACAACAGTGTGGACGG
R:
CATGTGCACTCACTGGTACCC
Band lengths:
351-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]