GgaINT0044668 @ galGal3
Intron Retention
Gene
ENSGALG00000004345 | OIT3
Description
NA
Coordinates
chr6:12331774-12332749:-
Coord C1 exon
chr6:12332375-12332749
Coord A exon
chr6:12331885-12332374
Coord C2 exon
chr6:12331774-12331884
Length
490 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
ACACTCCTGTTGTGCCCTAGATT
3' ss Score
9.19
Exon sequences
Seq C1 exon
CCCTGGACCCCTGCTCCGCCTACATCAGCCTGAACGAGCCCTGGAGGAACACCGATCATCAGATAAATGGCTCCCACGGCCAGCCCACGTGCGATAACCAGATCGATGGGGAGTGGTACCGCTTCACCGGCATGGCTGGCGATGCTATGCCCACCTTCTGCATCCCTGAGAACCACTGTGGGACGCATGCTCCCATCTGGCTGAACGGCAGCCACCCACGAGAGTCGGATGGCATCGTCTCACGCCAGGCCTGTGCCAGCTTCAATGGGAACTGCTGCCTGTGGAATACCACGATTGAGGTCAAGGCGTGTCCGGGCGGGTACTATGTCTATCACTTAACAAAGCCTAGTGTCTGTTTCCACGCGTACTGTGGGC
Seq A exon
GTAAGTAACTGCAACGGCAGCTCTTCTGAAATCTGTTTGTCCTTGTGATGCAGGAAGGGGGGGGTGAACATTCATATTCCTCAAAGGGTCTGACTGCATTCTTGCTTTCTCACCCAGAAACATGTCAGGTGGTGCAACGCCTGTCTACATGACACTGGTTAGACTGTTCTATGTAGGTGAATTCTAGACTTTGTTCAGCTAACGGAAATCTTCTACAGCTGACCTGATCGCAGTGATTTAATGCTAAATGTAGGCCTTGTGGCTTGTCTTGGCATGCTGCTACATTTGCATCTTCGACTTACAGTAATTAAAGCAGAGCTAGTAATAATATCATAATAATATAGGAATTAAACTAGATTCTGATCAGCTTCCAGCAGTTCAGCTTTCTCGTTGTGGGACAGGTCTGTGACTGATGGTCTGATGGTAGGAATACAGTATTTTCAGTGTGTGCTCAGTGGTTTGTGTTGAAAACACTCCTGTTGTGCCCTAG
Seq C2 exon
ATTTTTATGACATCTGTGATGTGGTGGATTGCCAGGGCTCCTGCCTGGACACCAATGACTGCACATGTTCCCCAGGGACAAGACTTGGACCTGATGGACAGACATGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004345:ENSGALT00000006932:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACGTGCGATAACCAGATC
R:
TGTGCAGTCATTGGTGTCCAG
Band lengths:
357-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]