RnoINT0105235 @ rn6
Intron Retention
Gene
ENSRNOG00000046365 | Oit3
Description
oncoprotein induced transcript 3 [Source:RGD Symbol;Acc:735082]
Coordinates
chr20:29025822-29027013:-
Coord C1 exon
chr20:29026639-29027013
Coord A exon
chr20:29025930-29026638
Coord C2 exon
chr20:29025822-29025929
Length
709 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
TGACTGTTGTCCTTCCACAGATT
3' ss Score
11.41
Exon sequences
Seq C1 exon
TCCTAGATCCTTGTTCTGCTTATATCAGTCTGAATGAGCCCTGGAGGAACACTGACCATCAGTTCGATGAGTCCCAAAGTCAGCCTCTCTGCGACAACCATATGGATGGGGAGTGGTACCGCTTCACAGGTATGGCGGGGGACGCCATGCCCACCTTCTGCATACCAGAAAATCACTGCGGGACCCATGCACCTGTCTGGCTCAATGGCAGCCACCCCCTAGAAGGGGATGGCATTGTGCAACGCCAGGCCTGTGCCAGCTTCAAAGGGAACTGTTGTCTGTGGAACACCACGGTGGAGGTCAAGGCCTGCCCTGGAGGTTACTATGTGTATCGGCTGGCCAAGCCCAGCGTCTGCTTCCACATCTACTGTGGAC
Seq A exon
GTAAGTACCCTCCTGTGCTCTCTTCCTTCCCCGGCAAGGCCATGGATGGAGTTAAAGGGAAATGTGAATCCCAGTTACTGTGATGCCTGTGTCTTTTATGTTTATTCATTAAAACTGTAAGGTTAAAAGTGATGGATTTTCACCTTCCTGAGTAAGGAAGAACCCTCAGTCATCTCCCTATTGAGAGAGGAGCAATGGATGAACATCAGACAGATGCCCAGACATCTACATGGTAGCTTTGTGCTTGTTTCCACTACCTTTTAGACCCAATATATAACAGGAAGAAGCAACTTAGTGTCAATAAAACCTTCAAAGTGAATTTCATCACATCACTAATGCCATCAAAATCTGGGGGACCTCATAAACACCCTTAACAGTAGAGCTCAAGCCCAGGGCCCACAGAAGCTGGTGTTCCCAGCTCCTGTGCACATTCTGGAAAGTCCACAGTGAAGCATGACCTAACCCAGAGCACCTAACTCATATGCACTGACGTGTTCAGCTTGCTGAAGTCCTCTGGCCACCATGAGCCTGAGATCTGTAGCTGGGATTGGCTATCTGAAAGGACCACACTGTCCATGTTGTCTCTCCATTGGTGAGACACGAGAAATGGCAGGAACCTGTAGCCCACGCCTGCCTTCATGAGACAACTCAAAAGACAGGGTCCTCTGAGCCTCAACACTCACAGAAAGTGACTGTTGTCCTTCCACAG
Seq C2 exon
ATTTCTATGACATTTGTGATGAGGATTGTCATGGCAGCTGCTTGGACACCACTGAGTGCGCATGCTCTCCGGGAACCTCGCTGGGCCCAGATGGGCAGACTTGCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046365:ENSRNOT00000075682:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGAGTCCCAAAGTCAGCC
R:
CAGCTGCCATGACAATCCTCA
Band lengths:
351-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]