HsaINT0118127 @ hg19
Intron Retention
Gene
ENSG00000138315 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:29953]
Coordinates
chr10:74658422-74660242:+
Coord C1 exon
chr10:74658422-74658796
Coord A exon
chr10:74658797-74660134
Coord C2 exon
chr10:74660135-74660242
Length
1338 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TAATCTTTATTCTTCCATAGATT
3' ss Score
8.87
Exon sequences
Seq C1 exon
CCCTAGATCCTTGTTCTGCTTACATCAGCCTGAATGAGCCCTGGAGGAACACTGACCACCAGTTGGATGAGTCTCAAGGTCCTCCTCTATGTGACAACCATGTGAATGGGGAGTGGTACCACTTCACGGGCATGGCGGGAGATGCCATGCCTACCTTCTGCATACCAGAAAACCACTGTGGAACCCACGCACCTGTCTGGCTCAATGGCAGCCACCCCCTAGAAGGCGACGGCATTGTGCAACGCCAGGCTTGTGCCAGCTTCAATGGGAACTGCTGTCTCTGGAACACCACGGTGGAAGTCAAGGCTTGCCCTGGAGGCTACTATGTGTATCGTCTGACCAAGCCCAGCGTCTGCTTCCACGTCTACTGTGGTC
Seq A exon
GTGAGTACCTTCCCTGTGCTCTTTTTCTCCACCAACAAGGCCACAGGTGGAGTCCAAAAGTGCCAATTATAGGATATGCAGTTACAGTGGCAACTATATCTCAATCTGAACAACATTGATGTGGGGCTAAAGATACCTCTGATTTCTGAGATCTCTTCTTAGAACTTCTGAAAAATTCCTGAAGAAATAGAAGGGGAAAGGAGCTATGACTTTGATCAGTTCTTTTTAATTTTGTCTGAATTCCATTCAAACAAAACATTAGAAAATGAAACATTGGGCCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACAAGATCAGGAGTTTAAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTCTACTAGAAATACAAAAATTAGACAGGCGTGGTGGCAGGCAACTGTAACCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGACGTTGCGGTGAGGCGAAAATCGTGCCATTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGATTCAAAAAAAAAAAAAAAAGAAAAAAAGAAAATGAAACACTGATTTAGATTATCTAAATGGTGGATTTCCAACTTTTGAGTATGGAGAACCCCTTTTTAAGATAGATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGATAGATAATCAGACATCCATGTGATTGGATTGTGTTTAGTGTCCACTGATTTTTTTAAGTGATATACAATGGGAAGAAGCTACTTTATGTCAGTAATACTTTTAATTTCTGTGTTATTAATCCTGTCAATGTCTGTATTCATTTTTTAAATAGAACACTAGAAGAGTAGGACATAACACTTTCTTAGTCTATAGCTCTTGTATGGTGAGGTTTTGGATTTGCAGAAACTCTATGGCCACTCAAGGGCCTGTGGATCTGAAGTTGGGAATCATTGATCTAGATGACAGAAGATGCCCTAGATTGTTGTTTTCCATTGGTTTATATAAACCCTGAACAATGAGGATTCCCTTGATGGTGGCTGGAAACTCATCCCCCAGGCTGCACTTATGAGGCTCTCTCAAGAAGAGGGTCAGCTGGATGCAGTGGCTTATGCCTGTAGTGCCAGCTACTTGGGAGGCCAAGGTGAGAGGATTGCTTGAGCCCAGGGGTTCGAGGCCAGCCTGGGCAACATAGGGATACCACCCCCCCCGACCCCCCGCACCATCTCTAAAAAGAATGAAAGAGTGTCTTCTGGTCTCCTGCCCTCATGAAGATAATCTTTATTCTTCCATAG
Seq C2 exon
ATTTTTATGACATCTGCGACGAGGACTGCCATGGCAGCTGCTCAGATACCAGCGAGTGCACATGCGCTCCAGGAACTGTGCTAGGCCCTGACAGGCAGACATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138315-OIT3:NM_152635:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTGAATGGGGAGTGGT
R:
ATGTGCACTCGCTGGTATCTG
Band lengths:
342-1680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)