MmuINT0113043 @ mm9
Intron Retention
Gene
ENSMUSG00000009654 | Oit3
Description
oncoprotein induced transcript 3 [Source:MGI Symbol;Acc:MGI:1201782]
Coordinates
chr10:58900458-58901663:-
Coord C1 exon
chr10:58901289-58901663
Coord A exon
chr10:58900566-58901288
Coord C2 exon
chr10:58900458-58900565
Length
723 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TAACTGTTGTCCTTCCATAGATT
3' ss Score
9.95
Exon sequences
Seq C1 exon
TCCTAGATCCTTGTTCCGCTTACATCAGTCTGAACGAGCCCTGGAGGAACACTGACCACCAGTTCGACGAGTCCCAGAATCAACCTCTTTGCGACAACCATATGAACGGGGAGTGGTATCGCTTCACGGGGATGGCAGGAGATGCCATGCCTACCTTCTGCATACCGGAAAATCACTGTGGGACCCATGCTCCTGTCTGGCTCAATGGCAGCCACCCCCTAGAAGAGGATGGCATTGTGCAACGCCAGGCCTGTGCCAGCTTCAAAGGAAACTGCTGTCTGTGGAACGCCACGGTGGAAGTCAAGGCCTGCCCCAGAGGCTACTACGTGTATCGGCTGGCCAGACCCAGCGTCTGCTTCCATGTCTACTGTGGCC
Seq A exon
GTAAGTACCCTCCTGTGCTCTCTTCCCTCCCCAGCAAGCCCACAGATGGAGTTAAAGAGAAAGGCACCGTATGAAAGCCAGTTATTGTGATGCTTATTTCTTCATTAAAAGAAAAGAAATTAAAACATTACAAGATTAGAAGTGATGGATTTTCACCTTCCTGAGTATGGAAGAGCCCTCAGTAATCTACCTGTGTAGTGATGACCAATGGGTGAACAGATAGATGCCCAGACATCCACACGGTAGCTTTGTGCTTGCTTTTGATGCTTTTTAGGCATGATATATAACGGGAAGAGGCAACTTAGTGTCAATAATACTTAGAAGCGAATTACTACATCACCAATGCCATCAAAATCTGGGGACTTCGTAAACACCTTTAAACAGTAAAGCTCAAACGCAGAGCCCATAGAAGCTGGTGTTCCCAGCTCCTGTGCATACTCTGGAGAGACCACAGTTGAGCATGACCAGGTTCATGTGCACTAATGTGTTTAGTTTGCTGAAGTCCTCTGGTCACCATGGGCCTGAGGTCTGTAGCTGCGAATTGGTTATTTGAATGGACCAAACTGCCCATGAGCAGCTGGTCTTACTCCATTGATGATACAGTCCCTGAGCCATGAGAAATGTCAGGAACATGTGGCCCATGCCTGCATTCACGAGACAACTCAAAAGACAGGGTCCTCTGAGCCTCACCACTCACAGAAGGTAACTGTTGTCCTTCCATAG
Seq C2 exon
ATTTCTATGACATCTGTGATGAGGATTGTCACGGCAACTGCCTGGATACCACCGAGTGTGCATGCTCTCCAGGAACCTCGCTGGGCCCAGATGGGCAGACTTGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009654-Oit3:NM_010959:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGAGTCCCAGAATCAACC
R:
CAGTTGCCGTGACAATCCTCA
Band lengths:
351-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: