BtaINT0105838 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48374821-48377766:+
Coord C1 exon
chr2:48374821-48374888
Coord A exon
chr2:48374889-48377577
Coord C2 exon
chr2:48377578-48377766
Length
2689 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTATTTGTTTCATCTTTCAGGCG
3' ss Score
10.79
Exon sequences
Seq C1 exon
AATTCCAGAAGTTTGTTCAAAGAAAGGCCCATTCTGTTTATAATTTTGAGAAACCTGTTGTCATGAAG
Seq A exon
GTAAGATTTTTTCTGCAGATAGGCTTATTTTTGTCTACTTTGATCATATATATCATAGCTGAACTTTTATTAATTTTGAAACATTAGGTATTATCATAGGAATTTTATTCAAAACAGACACCGCCCCCCCAAAAAAAACTCTAAAAATGAAATGTTTGAATAATTCTGAAGAGTACTGTTGTTTTAGTTTGTGGGGATATACTGCCCTCTACTGTCTCCTCCTATCAATTGCGTGCTGAAAAGGAACTACTCATTAAATTCTACCTAAGCATGCAGTCCATGGGGTTGCTGAGGGTCAGACACGACTAAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGCAGGAGCCTGGTAGGCTGCCGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAGCAAGACACAGCTTATAGCTCAGTTGGTAAAGAATCCACTTGCAATGCAGGAGATCCTGGTTCGATACCTGGGTTGGGAAGATCCGCTGCAGAGGGGGTAAGCTACCCACTCCAGTATTCTTGGGCTTCCCTCGTTGGTAAAGAATCCGCCTGCAGTGCGGGAGACCTGGGTTCAGTCTGGGTTCAGAACATCCCCTGGAGAAGGAAATGGCTACCCACTCCAGTATTCTGGCTTGGAGAATTCCATGGACTGGATAGTCCATGAGGTTGCAAAGAGTCAGACACAACTGAGCGACTTTCACAAGACACAGATACAGCCCTATCTTTTTATACCCTTAAGGTTGGCTTTATAAAATCTCAGCAGTAAAAGGAGATAGAATGAGTCATTAAGAAAATAAAAAACAATCTCATTGGTTAGTGAGGGTATATAGAGACAATTTTGTTAGAGCTTGGGTAAGGCATGAGTTTCAAAACTTGAGGAAATTTATTCTAGCATACCATTGTCCACCAGAAACATGAGCTACATAATGTAATTTTAGATATTCTAGTAGCAACAACGACAACAAAAAGAAGGTGAAAGGTGAGATTAACTTAGACAGTAAGCTTTATTTAATGTACCAAAATATTTAGATCTGTAGTCAATATAGAAAGGTATTAATGAAGTTTTTTATTTTCTTTTGTGTTAAGTCTTTGAAATTCTGTGTGTTTACACTTAAAGCACATTTTGATTCACTGATTAGTCATTGGAAATAATTGCTCTTTAGATTCTTTAAATTATTTGTTTAGACCCTTATTTAGCTGAAGAAGTAAATTTACATTCTGAAATTGTTTCAAACATACTTAAAATGTTCTGTTAGTTTTTAAACTTTATAAAAATAGAGTTCCACATTTCAGATCCTCAAGAGCCCATTGAGGTTACATATTGAATAGCACAGCTCTCGAGGACTTTATGGGAAGAAACACCTTTTATGAATTTTTTAAGCAGTGCACCCATAAGTTTTTTAGTATCCTTTATAAGGATATTAAAGGATATTAGAAGTCAGAAGCTTATTTTTTAGGGCAACCAAAAAAACATGAGATCAGGGCATTGCCATTTTCTTCAAAACAATAGGAAAAATACTTAACGTACTGGAGGTTGGTTTTTTCCTCCCTTCCTAATGATAGTCATGGTTTATGGGAATGTATTAGTGGAAAGGGTTAGCTGAGCACTTAAATTTTTACTAGTAGCTTGAGACTGGTCATTTCTACATTTTGATTAAGAAAGTATTTTGCTACCTAGAAATATTTGAAGTCTCAATTTTATTCAGCCAATAGCCAGATCCTCTAGTATTTTCTCATTTTCAGAAATTGCCTGAACAATTTTTCTTTTCATAAGAATTTTTCTAGTTTATAAAGAATGTATCCCAGTAGTATTTTTCACAGTGAGGCTTAAGAATAGAAAGGTCAGTGTATCAGTATTTAATAGTTGATTGGTCCTAATTTAATGTTTTCTTTTTTTCTTCATATCCTAATAAAGTAACTGAAACAACAATCATGGTTAGAAAAGACATGGTACATGAAGGGCTAAGAGGAAGTGGACAGTAAGGAGCCCTATTAATGTGGGGAAGATGGAAGAAAGGGACTTTCTGACAGGTGGTAGTGGTCTCTGTCAGACTTCTTCAGGAAGGAGGGGCCTGTCCTCTCCTCCATACCTCCACCACTCTGCTGAGTCATTTACATACAGGATCAGCTAAACAGGTGTGCTGCTAGAGGTCTTCCCTGCTGCCCTCTGTTTTTACAGCTATATTAAACTTTTATACAGCAAAGTCTAACAAAACAAAACATAAAGGCAAATTTGAGTAACCTGGGCCATTAGTTAAAATGTACTGGTCTTATCAGACTTTGGGTTTTCATAGAGAACCAGAAACTCTGTTAACTTAAGTACTAGGAAAAGATATGACAGAATGAGGTGAGGAACAAAATCAGATTGTGCAGTTGAGTTGTTTGTTCCGTTTACATTCAGTGATGTAGGGACAGGCAGCTCTATACTGACACTGCCTCATGTGATGTGTGAAGTTTTTATGAGGTTGATGAGAATTGTTTTTGAACTTTACTGACATCTATTATTACATTTTGTTTCCTAGTACTCTGTTCTAAAACTGACTAAAATCCTAACTGTTCTCTGGCTTAATGTTGTTTACTTCCCTTATTCAACCTAAACTATTTGTTTCATCTTTCAG
Seq C2 exon
GCGTTTGAACACTTACAACAATTAGAATTAATAAGGCCCATGGAAAGAACATCAGTAAATGCACAGAGGGAGTATCAGCTGATGAAACTACTTTTGGATAATACACAAATTATGAATGCTTTGCAGAAATACCCCAACTGTCCTACAGATGTTAGGCAGTGGGCGACATCCTCCCTAAGCTGGTTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291:ENSBTAT00000020335:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(11.5=100)
A:
NA
C2:
PF146291=ORC4_C=PD(22.4=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]