GgaINT0046415 @ galGal3
Intron Retention
Gene
ENSGALG00000012448 | ORC4
Description
NA
Coordinates
chr7:36187114-36188100:-
Coord C1 exon
chr7:36188033-36188100
Coord A exon
chr7:36187418-36188032
Coord C2 exon
chr7:36187114-36187417
Length
615 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTCTTTTGGTTTGCTTTCAGGCA
3' ss Score
9.17
Exon sequences
Seq C1 exon
AATTCCAGAAGTTCATACAAAGGAAGGCACACTGCATGTACAATTTCGAAAAGCCCGTTGTTATGAAG
Seq A exon
GTAAACCTGAGACGTACCTCTGTCTGAAGTATTTCGATGTGTTTTTTGCTGGTGCACGCGTTGGGCGGGCGGTCGCACACCGCGCTGGGGCGGAGTTGGAGGCCCTGTGCTGGCAGAGCCGTGCTGGGAGCGGCCGCAGCCCTGCCTTGCGCTCTCGGTGCTGCACTGCCCTCTGCTGGTTTCCGCCCGCTGCGGTCCGGCAGACGCTCACACGTGAGCGCAGCGGGGGGCGGATTCTTGGTTTTCAAATGAGCGCCGCCGATTTAAGCGTGGGGGCCGGCAGATGTGTTCAGGTAATGAACTCTGCGACCAGCAGTTCAGTAGTCCAAAGCTATTCTGATCTTGTAGCTTTTAAGCTGAGTTTGATTGTATGTACAAAAGTTTTTAAGTACACTTTTCTTAGAAAACACTATTCTTCTACTCATCTCTTATGGCTTACTATCTACCAAAATGGGCATAGGGTAGAACTGAGCTGACATTTCGTGTCTGTCTGTTTCTGTAGCACATCACGGGCTTCTATTAAAACAGCATCTCGTGTGTCATTCCAACTGACCAGTGCAGCCCAGAGCGATGTTGTCTTCCTTCTCCTAATCTTTTCTTTTGGTTTGCTTTCAG
Seq C2 exon
GCATTTGAACACTTATTGCAACTGGAATTAGTGAAGCCCATAGAGAGACCGTCGGTGCGTTCTCAGCGAGAGTACCTCTTAATGGAACTGCTGTTGGACAACAACCAAATCATGGATGCTTTGCAGGCGTATCCCAACTGCCCGACGGACGTCAAACAGTGGGCAGCGTCGTCGCTGAGCTGGTTGTGAACGTCTGGGAGCTCACAGCACCACTGCGTCAGGACATCTGGAGGTAACTGTAGTCTGTGCAGGATGCAACACCCACAGTGCGGTGGTCAAATGAATAAATTTTTGCAAGAAGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448:ENSGALT00000020350:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(11.5=100)
A:
NA
C2:
PF146291=ORC4_C=PD(22.4=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCATACAAAGGAAGGCACACT
R:
TTCATTTGACCACCGCACTGT
Band lengths:
343-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]