RnoINT0105620 @ rn6
Intron Retention
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33037034-33040578:-
Coord C1 exon
chr3:33040511-33040578
Coord A exon
chr3:33037445-33040510
Coord C2 exon
chr3:33037034-33037444
Length
3066 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTTTGTCTTTTTTCTTGCAGGCA
3' ss Score
12.3
Exon sequences
Seq C1 exon
AATTTCAGAAATTCATTCAAAGAAAGGCCCATTCTGTTTATAACTTTGAGAAACCTGTGGTCATGAAG
Seq A exon
GTATGGTTTGATTTGCTATTTTCTAATCAGATCCAGTGAGATGATATACACACACACACACATACACACACACACACACACATTTCATACGTCTTTGAACCCTTAGGTATTTTATTATAGGAATTTTTCAGCAAAATTTTGTAAAACTAAAATGCTTCAGTAACTCTGTAGATAACCCGTTTTACAGTTTGTGAAGATACATTGCCCTCTGCTGTCCGTTCTTAGCACTTGCCTACTGAAAAGGAACTCACCCTCTCCAATCCACAAGTTTATTTAGGGTAAGATATCAGTTTACAACTTTAAAATGATATCCTAAAATGACTCCTGCACTACAAAGAAAATTAAATCACATTATATAGTCTTACATTTTCCAGTAGGGTAGGAAATAAAGGTCAAATAATTGTAACATCATAACCCAATTGATGAAAAATATTTCCAAGTTTATGATATAAGTGTTTCCTAAACTATTTTCTTTTGTGTCTTTAAAATTTGGTATATTTATAAAAAGTTAGAGCCGATCCCAATTTAATAAATATTCATTAGAAATTCATTCTTTAAACTAATTATATAGCTAAAAAAGATTTTCATTTTAAAATTATACCAACTATAAGTAAATTTAGTCTAAGCATTTTAAGCTTGTGTTTAATGAAAATTAAATAAAATGTAAATACAGAGTCATACATTTCAAGGTCCTGTTTGTTCAGTATTGGTGCAGTGTGGTTCTGGGGGCCATGTGGGAGGAAGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGTAGAAGCTTGATCCTCTGGGATTCCTTATAGAGCATAGTCAGAATTTCCTTTTCTGTAGTCGTTTTTAAAAGTGAGCAGAGTTGCAGTTGAAGCAGCAGCAGTCATCCTGAGTGTAGATTCTTCCCTTGCCCTCCTGTCTGCTTGCTGCAGTTTTGAAAAGGGCACCTGAGAGTATTTAGGAATAATTTATAGATATTCATTTGTACATTTTAAAATAGAGTATACTTTGCATCTTGGAAATATGTTTTCAATTTTGTTAAGCTACACCTAAAGAATAATTTCTCATTGTTTTCAAAATGAATAGTGTCCGCTCTTTTCCTTCCAGTAAGAATCTTTAAGATAAACAGAGTACATTCCAGTGACACTTTTCACAGGGAACTGTAGGAACGCTTGAGAATCTCCATCTGGGTTACTGTTCAGGATTTCATCAGACTGTAGGTTTTTTTCTTGCTTTAGTAACATACTTAAACAAGTGGAGCATAAGTTGTAGAGTGAGAGGAACCAAACAATGAAGAGCTCCTTTAAGGCAACCAAGAAGGCTGGGGGTTAAACAAACATAGTCGCCCCTCCCCCCCAGGTCTGTGCCGTCTTACAGGGTCCTTTGCTTACATGATCAGCCCATAGGACTTACTTACTGGGGTCTTTCTTACGGCTGTTAAACTTTTCTTTTTAAAACTTTATTTAATTTTTCATTGAAAGTAGTTATTTTCATGCATGGTTTCCCTTCCCTCAGATTCTTCTCACCACCTAACTCTTCTAATGAGACTCAAGCGCACGCACACATGCATACACACACACACACACACACACACACATGCACACTCTTTCTTTTTTCCTCTCTCTGACAGGCTAATAGAAAAGGTAAGCAAGAATTAAACTGATAACAACAGAAAGGGAGGGAGGAAGGAAACATGCATCGGGAGAAAGCATGCACAGAGGCACACAAAAAAAAATCTATGAAAACAAAATTGGAAGCCGTAATACATTACCCAGAGAACAGTAACAGGAGAAAATGCTGAAACAAAATAAAATCATATGGGACGGGGAAAAAACCCAATACCAGTGGGTTCATTCTGTGTTGGCTACCTGCTACTTGGCATGGTCCGTATCCTTAAGTGTAGTTTGTACACCCAGAGAGATGGGAGAATTATTTTCTCCTTTGCAGACGATTGTTGATTGGAGGTAGCTTCTTGGTTAGAGAAAAGGAGTCTACTTCCCCATCTCAACACTTGAGACCCCATCTGGTTTGCGGTTTGGAAAGTCTTTTTGCCTCCTTTTTCACAGTTTCTTTGAGCTTTGAAAGGGAGGGCTCTGATGAAAAACTTGCATTTAGTTGTTTCAAGGTCTCTCATTCTGCACATGTTCCAGTTGTGAGTCTCTACATTCGCTCCCATCTGTGCAGGAGAAAGCTTTACTGATGGTAGCCAAGTGGCACACTGATGTATTAGTATAGAGCTGTACTCTAATGTCCAATAAGACTTTATTGAGAATGATAGAAAATATACATTCCAGTAACCTATCTCATTAGAAGTCTTAGCAGATTAAGGTCTTAAGATCAAAGTAATCAACAATGGACTGGAACTATGTAGCTCAGAAGTAGAGTCCATGCTGAGCATGAGTAAGATTTAGGGACAAACCCATCGCCCATCACTCAAACAGTCCAAGTGTCGTACGATACCGTCTGCCTAGAAACAAAACCTAATGACTAAGGTCCAGGTAAAATTAATATCTGCCTGATTCACATTGAGCAGTATGGGGACACATAACTTTTTCCAAGTGTGCAGTTTTTATGGATTTGAATAAACTTGCATCTGAAGGTGGGGTAGGGCTATTTTGTTCAGTGGTGCAAGCTAAGCACTTTATACTGCTGAGCTAAATTCCCGTTCCTAAGGGTGATTTTAACTCTCTTTGTGACCTCCCATTCTGTTCCTAACTGTCATGAACAAAGTTGAAGTTTGCTAAGAAAACTTTAATCCCAGCACTTGGGAGGCAGAAGGCAAGTAGATTTCTGAGTTGGAGGCCTGGTCTACAAAGCAAGTTCTAGGAACTACACAAGGAGACCCTGTCTTCAAAAACTTAATGAATGGGCAAATGAATAAAAGATTTTAATTTCAAATCAAGTGTGCGTGGGGTAGAGAGTACTTAGGAAAAAGGTAGTTCGAATCTGCTGATTTCTCTTCCTTCTTTTTCACCTGCCACTGTTTCCCACCTTACCAAAACCAGCAACTATCCTCTGGATTTAACAAGTGTCCTCTTCATTCTAAGCTTTGTCTTTTTTCTTGCAG
Seq C2 exon
GCATTTGAGCACTTACAACAATTGGAATTAATAAAACCCATGGAAAGAACCTCAGTCAATTCTCAGAGAGAATACCAGCTAGTCAAACTACTTTTGGATAATACTCAGATTATGAATGCCCTACAGAAATACTCCAACTGCCCTACAGATGTCAGGCAGTGGGCAACATCCTCGCTCAGCTGGCTGTGAAGATTTTAAGTACATTTCTGTGAAGACCTAAAACTAGTGTTCTTTAATAAGATACGCTACTACATTACTTTGTTTATAAATATTGTTTATGGGAAACCTGCACTTAGTATCTTGACTATGTTTTGAATATTGACTGTGCATGGACAGTTTCATTAATTTAAATTACACCATACAAGTAACAATTCAAAATAATAAAATGTGCTTATTTTACGGGTGATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021:ENSRNOT00000006937:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(11.5=100)
A:
NA
C2:
PF146291=ORC4_C=PD(22.4=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]