BtaINT0105909 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71882274-71882645:+
Coord C1 exon
chr17:71882274-71882322
Coord A exon
chr17:71882323-71882498
Coord C2 exon
chr17:71882499-71882645
Length
176 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GAACTCCGCGTCCCTGGCAGGTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
AAAAGCTGAGGCAGGGACTGCAGGCTCCGTGGAATGGACCGCAGACAAT
Seq A exon
GTGAGTGAGGGGACCCTGGCGGGGGGGAAGCGGGGAGGCCGGCACTTTGACCTCAGGCCCTTCGGGGGGCCCTGCACCCTGGGGGCCTTCATCTCAGCCCCGGCAGAGCCTGCCCCTCCCCCAGCAACGTGCCAGCCGGCGCCGCCTCTGACGGGTGAACTCCGCGTCCCTGGCAG
Seq C2 exon
GTGCTGGATGGCGCCTCGCCTGTGCCCCAGGGGCCCCCCAAAGTCAAGAGGCGTGTCCGCATCCCTGACAAGCCCAACTACAGCCTTAATCTCTGGAGCATCATGAAGAACTGCATCGGCCGGGAGCTCTCCAAAATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(5.0=38.8)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTGAGGCAGGGACT
R:
GCATGGGGATTTTGGAGAGCT
Band lengths:
194-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development