Special

BtaINT0105909 @ bosTau6

Intron Retention

Gene
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71882274-71882645:+
Coord C1 exon
chr17:71882274-71882322
Coord A exon
chr17:71882323-71882498
Coord C2 exon
chr17:71882499-71882645
Length
176 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GAACTCCGCGTCCCTGGCAGGTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
AAAAGCTGAGGCAGGGACTGCAGGCTCCGTGGAATGGACCGCAGACAAT
Seq A exon
GTGAGTGAGGGGACCCTGGCGGGGGGGAAGCGGGGAGGCCGGCACTTTGACCTCAGGCCCTTCGGGGGGCCCTGCACCCTGGGGGCCTTCATCTCAGCCCCGGCAGAGCCTGCCCCTCCCCCAGCAACGTGCCAGCCGGCGCCGCCTCTGACGGGTGAACTCCGCGTCCCTGGCAG
Seq C2 exon
GTGCTGGATGGCGCCTCGCCTGTGCCCCAGGGGCCCCCCAAAGTCAAGAGGCGTGTCCGCATCCCTGACAAGCCCAACTACAGCCTTAATCTCTGGAGCATCATGAAGAACTGCATCGGCCGGGAGCTCTCCAAAATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.882 A=NA C2=0.429
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(5.0=38.8)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTGAGGCAGGGACT
R:
GCATGGGGATTTTGGAGAGCT
Band lengths:
194-370
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development