HsaINT0118557 @ hg19
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:8504]
Coordinates
chr22:31285164-31285623:+
Coord C1 exon
chr22:31285164-31285221
Coord A exon
chr22:31285222-31285476
Coord C2 exon
chr22:31285477-31285623
Length
255 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GGTCCCCACTTATGTGGCAGGTA
3' ss Score
6.47
Exon sequences
Seq C1 exon
CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAAT
Seq A exon
GTAAGTGAGGGGGAGCACTGTAAGGGCCAGAAGGCAGCTTCTGGCCTAGGGGGTGGGAGGGACAGGCCAGCACCAAGAACTGGGGGCCAGCAGGCAGGCCCATGCCCCAGTCCAGGAGCACCATCCTGGCCTTCCACCAGCAGCGTACCAGTGGCCGGCTTGGTGCCAGTCCTCAGGGTGGAGGGCAGAAACTTGGAAGCCAAGGGGGCGCTCTGGCCTCTGCTGACGGTGAGGGGGTCCCCACTTATGTGGCAG
Seq C2 exon
GTACTAGATGGTGCCTCGCTCGTGCCCAAGGGTTCATCCAAAGTCAAGAGGCGAGTCCGCATTCCCAACAAGCCCAACTACAGCCTTAACCTCTGGAGCATCATGAAGAACTGCATCGGCCGGGAGCTCTCCAGGATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792-OSBP2:NM_030758:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.126
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(0.6=10.0)
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(17.8=38.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGCTGAAGGTAGCACCG
R:
CGGCATGGGGATCCTGGA
Band lengths:
204-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)