HsaINT0118557 @ hg38
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr22:30889177-30889636:+
Coord C1 exon
chr22:30889177-30889234
Coord A exon
chr22:30889235-30889489
Coord C2 exon
chr22:30889490-30889636
Length
255 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GGTCCCCACTTATGTGGCAGGTA
3' ss Score
6.47
Exon sequences
Seq C1 exon
CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAAT
Seq A exon
GTAAGTGAGGGGGAGCACTGTAAGGGCCAGAAGGCAGCTTCTGGCCTAGGGGGTGGGAGGGACAGGCCAGCACCAAGAACTGGGGGCCAGCAGGCAGGCCCATGCCCCAGTCCAGGAGCACCATCCTGGCCTTCCACCAGCAGCGTACCAGTGGCCGGCTTGGTGCCAGTCCTCAGGGTGGAGGGCAGAAACTTGGAAGCCAAGGGGGCGCTCTGGCCTCTGCTGACGGTGAGGGGGTCCCCACTTATGTGGCAG
Seq C2 exon
GTACTAGATGGTGCCTCGCTCGTGCCCAAGGGTTCATCCAAAGTCAAGAGGCGAGTCCGCATTCCCAACAAGCCCAACTACAGCCTTAACCTCTGGAGCATCATGAAGAACTGCATCGGCCGGGAGCTCTCCAGGATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792:ENST00000332585:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(17.9=38.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGCTGAAGGTAGCACCG
R:
CGGCATGGGGATCCTGGA
Band lengths:
204-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development