RnoINT0105698 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83954679-83955150:-
Coord C1 exon
chr14:83955096-83955150
Coord A exon
chr14:83954826-83955095
Coord C2 exon
chr14:83954679-83954825
Length
270 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
CATGCCTGTTCTCCCGGCAGGTA
3' ss Score
13.13
Exon sequences
Seq C1 exon
AAAGCCTGAGGGTGGACCTGGGACGACCTCTGTGGACTGGACCTCAGCAGATAAT
Seq A exon
GTACGTGAGGTGGGAGCACACAGGAGCCAAGGGCGGCCGGGCACCTCAGCCTCAGGGTTGGAGAGGTATCAGCATTGTGAACATAGGGCCACCTTTGGGTTCCAGATCTGCCTCCCATGCAGCACAGGAGAAGGTGGCCTCTGCCTTTCTCACCAAGCAGTGTAGCAGCATATGACTGACTGTCAGTTCTTGGAGGGTCAGGAGCAAGTACATGGACTCACGGGGGATGGGCTCGGGGTCTGCTGACACACATGCCTGTTCTCCCGGCAG
Seq C2 exon
GTATTAGATGGTGCCTCATTCATGCCCAAGGATTCATGCAAAGTGAAGAGGCGAGTCCGGATCCCTGACAAACCCAACTATAGCCTTAACCTCTGGAGCATCATGAAGAATTGCATTGGCCGAGAGCTCTCCCGGATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(5.0=38.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCTGAGGGTGGACC
R:
CATGGGGATCCGGGAGAGC
Band lengths:
199-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]