MmuINT0113595 @ mm9
Intron Retention
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3615091-3615554:-
Coord C1 exon
chr11:3615500-3615554
Coord A exon
chr11:3615238-3615499
Coord C2 exon
chr11:3615091-3615237
Length
262 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
CGTGCCTGTTCCTCTGGCAGGTA
3' ss Score
11.41
Exon sequences
Seq C1 exon
AAAGCCTGAGAGTGGACCTGGGACCACCACTGTGGACTGGACCTCAGCAGATAAT
Seq A exon
GTATGTGAGGTGGGAACACACAAGAGCCAAGGGTGGTGGGCACCTCAGCCTCGGGGGTGAGGAGGTATCAGCACAATGGGCCACCTTTGGGTCCCAGATCTGCCTCCCCTGTAGGGCAAAGGTTGCCTCTGCCTTTCCTACCAAGCAGTTTAACAGCATACGACCTTCTGTCAGTCCTTGGAGGGTCAAGAGCAAGTGCATGGGCCTAGAGGACCAGTGGAGCTCGGGGGTCTGCTGATGCGCGTGCCTGTTCCTCTGGCAG
Seq C2 exon
GTATTAGATGGTGCCTCATTCATGCCCAAGAATTCATGCAAAGTTAAGAGGCGAGTCCGCATCCCTGACAAACCCAACTATAGCCTTAACCTCTGGAGCATCATGAAGAATTGTATTGGCCGAGAGCTTTCCCGGATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435-Osbp2:NM_152818:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(5.0=38.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCTGAGAGTGGACCTGG
R:
ATGGGGATCCGGGAAAGCTC
Band lengths:
198-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: