BtaINT0105911 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71883414-71885569:+
Coord C1 exon
chr17:71883414-71883659
Coord A exon
chr17:71883660-71885448
Coord C2 exon
chr17:71885449-71885569
Length
1789 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCGTGGGCCTGGTCTCAGGTG
3' ss Score
6
Exon sequences
Seq C1 exon
GTGAACTTCAACGAGCCCCTGTCCATGCTCCAGCGGCTGACGGAGGACCTGGAGTACCACCGCCTGCTGGACGCGGCGGCGCGCTGCGGCAGCACAGTGGAGCAGATGTGCCTGGTGGCCGCCTTCTCCGTGTCTTCCTACTCCACCACCGTGCACCGCATCGCCAAGCCCTTCAACCCCATGCTGGGCGAGACCTTCGAGCTGGACCGTCTCGATGACATGGGCCTGCGCTCCCTCTGCGAGCAG
Seq A exon
GTGAGGCTCCAGCCAGGCCGGGGGTCAGGGTCAGACAGACGGGACACGGACTGACCCCGGGGGCCATCAGGCCAAGGCCTGGTCAGGTGGCTGGGTCTCCCGTGGGGGGGCAGGCTCCCCAGAGAGGCGGGGGGGCCGCGTGGGAGGAGCGCTGCGGGGGAGGAGGCCCCTTGCGGCCAGGAGCGGTGGGCAGGGGCGTCTGCAGGGACCCGCGGGGCTAGAGCTGCTGGGGTCTCTGCTGAGCTGAAGGCCTGCGCCCCGTGCGCTGTGGTCAGCGACGGTGGAGGCTGGGGGTGATGAGCCCCAGGCCCCACCCTGGCACCCTCGTCTGCAGAAGGGCAGTTCCAGCCATGCAGCACTGCGTGCTGGGGGGCAAGGCAGCCGGGACAGACCAGTCAGGCTGCCGCTGAGCGTCTGCTCTGTCGGCCGCTGCCGCGGGCCCAGGGATGAGTCAGGATGCTGACAGTCTGCAGTCCAGTGGCTGGTTTCAAAGGCATGCTCGGCCTGCCGCATGGGGCTGTGGGAAGCCGGACCAGGGGAGGTCGGAGGTCAAGCAGAGGCACCTTCAGGAGGGGTGGCTGAAAGGAGCGGGGCTGGGGAAGGCGGCGGCGATGCCCAGGGCTCCTGAGCAGAACAGAGCTGAGCCCTGCCCACGATGGACCAGGAGGTGCTCGCACTGGGGGGTCTCATGGGCCGGGGCGGGGATAGATACTGTGTGAATGGACGGTTCTGGCTCTTTTAGGAAGGGGGGTGGTCTGGGAGCAGCTTGGCTGACAGAGTGGGGGAGAGACAGCCGCTGAGGTCAGAGACAAGGGGGCGGGTGGCAGGAGGCCTCTGGCTCTTCTCTGTGTGGAGGAGTCACTGGAGGTAGAGGGGGCCGTTTTATGGGGAGCCCCCCGCCGCCGCCGCCATGGGGAGAGTGCAGCGTGCAGGGCGGACTCTGGATGCTGTTTTGAAGAACAGCCAGGATTTGCTAAGGATTAGAGGAGGAACGTGAGAAGGGCCAGGCATTTGGTGTGAGCGCTGGACGGACGGGGTCATCTGCCCGAGGAGGAGGCCAAGCAGAGCTCCAGGGCGCAGGGTCACGTCCTGAGTGTGTGGGGGTGGGCTCCAGTGGGGACCCTGGCGGCTCACTCGTCACCCAGGAGCGGCTGGCAGGTCTGGGCTGTGGAAGGCAGTGGGGGGGCCGCTGTGGGGCGTGTCAGGAGCCTCTGGGGGAGGGCTGGGCCCAAAGCCGCCGCGCCAGGTGGCCGCAAGACGGGAGGGGCTTCACCCCAACCCTGCGGCCAGCAGCCACAGAGACGAGGAGGACCGGGTGCGGGAACGCTGATGCGGTGGGTGTGGTGTGCTCAGACACAGTCGGGGTGCTCGGTGCGGGAGAGGACAGGGTGGAGGTGCCCAGCGGGCCGAGCAGGCGGCACCGCCGTCGGGCTGGGGCAGGAGCCGGGCTGGCTGGGGGCCTCCTGGTCTGGGCCACCTCGGTGCAGACACGCATGGCGTGACTGGAGTGGGTCTGAAGGCCTCCCTAGAGCCCATCACGCTCACTTCATTCACCCCCGCCCCACAGCCCAAGTCAGGTGTGGAGACCCCCAGGCCGCTGGCTCAGGCCCGCGGTGGTGGGGCGCCCGCCCTGCCTCCCCCCACCCAAGCTGCTCCCACTGCCGCGCCCTCGCTGTGTGGCTCTCCTTTCTGGGGGGTCCAGGGCCCCCCGTGCATCTGTCCCCCAGCTGGTAGGGGAGGGGCCTGGGCCGTGTCCACAGACACTCGTGACCCGTGGGCCTGGTCTCAG
Seq C2 exon
GTGAGTCACCACCCACCGTCCGCCGCGCACTACGTGTTTTCCAAGCATGGCTGGAGCCTCTGGCAGGAGATCACCATCGCCAGCAAGTTCCGGGGGAAATACCTCTCCATCATGCCGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.3=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCAACGAGCCCCTGTC
R:
GGAGAGGTATTTCCCCCGGAA
Band lengths:
352-2141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development