DreINT0108719 @ danRer10
Intron Retention
Gene
ENSDARG00000053487 | osbp2
Description
oxysterol binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-091113-18]
Coordinates
chr10:7968538-7970988:-
Coord C1 exon
chr10:7970743-7970988
Coord A exon
chr10:7968659-7970742
Coord C2 exon
chr10:7968538-7968658
Length
2084 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
ACAGATTGTGTTTCTCTCAGATC
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTGAACTTCAACGAGCCACTGTCGATGCTGCAGCGTTTGACAGAGGATCTGGAGTACAGTGAGCTGCTGGACCGAGCGGCCCGCTGCGACTCGTCTCTGGAGCAGATGTGTTTAGTGGCCGCTTTCTCCGTCTCGTCCTATTCAACCACTGTCCACCGCATAGGGAAGCCCTTCAACCCTCTGCTGGGAGAGACCTATGAGCTGGACCGGCTGGAGGAGTATGGATACCGCTCCATCTGTGAACAG
Seq A exon
GTCTGAAACCACACTCATAAACACACAGTTATTCTTATGAATTTATAATGATTATGCAGTTTTTAACACAAAGTTTAAGCTCTAAATGTCAAAACTATACCGCTGAGAAGAAATGTTCTTTTGTAAAGCATACAAATACCATAATATGTTTGCAGATATTTAAGAAACATGCTATGTAAACATTCAAGTTTATCTGAAAAAACAATGCTAAAGTCAGATATCCTGCTTTGAAAATGTGAGTTACGTGCCAGAATATCTGTATTTGTTTTGGTCCCTTGAACCTGCCTAATGCCAGTTTAGCCAATTATATTTCAGCACCCCGGGTTGCCTTGATAGAACGCAGGGTATTTCATTAATTCAGTCAGAAACTCTCTCAAAACATGTATCAGTGTCCTCCAGTTGACTGTAACTTTCTCCAAAATGAGACTGATTCAGACTTCCACATGAGGTTATTAATTAGCCAATAATATAAATACTATGAGCGTATACATTAGGTGAGCAGGTTACATTGTAGCCACGTGTCCCAACAACACGCTACGTGATGAGATTTGCAATGATAAACAATTTGGCTGAAACACAACAGAAATTTAAATACAGCCAATCAAAAGCATTGAATATTTATTTACTGCACTCTAATGAAATGGTACGGTTTATAATCTAATAAATACATATTAAACCTCTTTAACATGAATAAATGTAGATGCTAAATCATGTGTTGGCTTGTACTAACAGTTCTAAAGTTAAATTTCAAACGCTGAGCTAAACTATCTGCTGCTGCTTTCAGTATATGGCAATAAATGTCATGTAAAATGGCATTTAACCTCACATTGTTACATTTAACATTGAATAAAGCATGAGGTGTAGCCTACCCAAGGTGATCATTGTCAGTTTATCCTGTTGTTCAGCTGCAAGACATTGAAGCTGATTCTAATTTATAAATTTGAGGTGTTGGTTAGTACAAAAACACCTTTTAAAATGGAGAATACTCCTTCTATCGTGTGCTGTTGCTTTTATATAGGACATGATTTAAATTAGCCTTTAGGCTTGATAGTCAGGCACACTCCTGTTGGTGTCTTCAATCTGGCAGCCTGCACTTGCAAGTGTTTTGAACCAGGAGTGCAATACCTAGTTCAATCACTGGTCGTACATACTGCACTTAAGAGGTTGTATGGTGTGTCACATAAAAAAAAAAAGTTTTTGAAATATATATATATATATATATATATATATATATATATATATAAAAAAAAATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAGCCCAAACTAGTTTGTTTAATTAAAAGCAAAGCAATCTGAATCTAGGAGGTTGAAACGTGCTGTAAAAATACAAATTTTTAATTGGCATGTTTGATGTTATATAATAAAAATAAATTCCAAAATAATCATGTAAACAATAAAAATAATTTATAAATAAATTGTAATTCTACACCTTTTTACCAGGTTGGGAAACATTTAGAATAGTTGAAAAAATAATAAAAATATTTTAATTCACATATTTATAGAATAAAACCAGTTGTTTACCTAATATATATATATATATATATATATTCCAAATTGGACTATTAATATTACATTTTTTTATGTTTTATTGACTCTGACATCATAATTACATTGCATTTACAGTTACAAACATACATATTATTAACATAGCATTTCATAAATACATTTAATATAATACATAATGCATGTATATATTATTATTTTTTAAATTAAATTAATAAAAATGTTAGAAGGATTTCAGAAGACTGAGTAACACTGGAAACTAAAGTAAAGCCATGCTTGTTTTAATATTTCATAATATTCCTCTATAAATAGTATTGTTAATCAAATAAATGCCTTCTTGGCGAGCATACACGCCTTCTTTACAAACATAACATAAATCTAGCTGACACAAAGTCTAAAGCAGCTGTTTGTGTCTAAATAATAATAAAAACATACAGCACATATTTTGCTTGGCTTTTAATTAAAATGCTGTCTGTGAATGTGCACATGTTGACAGATTGTGTTTCTCTCAG
Seq C2 exon
ATCAGTCATCATCCTCCAGCGGCGGCACATCACGTCATTTCACAGCGAGGCTGGACTCTGTGGCAGGAGATCACCATCGACAGCAAATTTCGTGGCAAATACATCTCCATCATGCCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053487:ENSDART00000147368:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.4=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100),PF042659=TPK_B1_binding=PU(41.7=48.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]