GgaINT0008014 @ galGal4
Intron Retention
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10704178-10706194:-
Coord C1 exon
chr15:10705949-10706194
Coord A exon
chr15:10704299-10705948
Coord C2 exon
chr15:10704178-10704298
Length
1650 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTCCTTTCTCCCTCCCAGGTG
3' ss Score
12.77
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCGCTCTCCATGCTGCAGCGGCTGACGGAGGACCTGGAGTACCACGAGCTGCTGGACAAAGCAGTCAAGTGTGAGAGCTCCACAGAGCAGATGTGTTTCGTGGCAGCCTTTTCGGTGTCTTCCTACTCGACGACGGTGCACCGTACAGCGAAGCCGTTCAACCCGCTGCTGGGGGAAACCTATGAGCTCGACAGGCTGGAGGAGCTGGGCTTCCGTTCCCTGTGTGAGCAG
Seq A exon
GTGAGCCGTGCAGAAGGGCTCCCCGTGCCTGTCCTGCTGTTTGTGTCCGGCCAAAGGAGCCCTTTCTTGCAGGAGATGCAGCATCTCCCCATTTCAGGCTGGATGGAACCTTAAGATCTCGTTCCTTCCTTGTTATACTGCAGAGTTTTAATTTCCAAGCTTGGTGGCAACCTGAGAACCTCCAGCATCCCCGTGTGCTAATCACAGAGTACATCTGACACTCATCTATCAACCAGCAGGTCTTAATTAAAAACCTGGGGAGCTTAATGGGTTGAGACCTTGGAAGGAAATTGGCTCTTTAAAGCATAGCATACTCAGCTGGTGCTTCCCGTCCTTCTGGGGATGGACAGAGCTGTTTATCACTGCTGAAGGCAGGACATTGTTTTGAGGGGGCTCTGGGCTCCCCAGGAGGTGGCTGTGCTGTCCCAGGGACAGTGTGACCATCGTGTTTCCCAGCACTCAGGAACAAACCCACAGGCCTCTGTCACTGCAGGGACCAGTGAGTGTTCAAACCTGCAGTGCCATTTGGCACTGAGACCTATGGGCAGAGGGCTGCGTGTTAGCTGTTCTGTGGGGCTGTGCTTGCACACTGTGTCCTCCGGGTGCCCAGTCCTATTTAGTAGTGCTCTGGAGATGCTGCACCTTGTTCAGAGGGAGGCAGGAAACTTTTTGACTAGAGGAGGCAGCCTAGATAGCTCCTCAGAAGGGCACGATGTGTGGAAAGGGTTTTGCTGCTAGTCCAGATGTGGAGCAGGCTCTAGGTCACATTGTGCCCCTCTGTGCCAATGCGAGCTATGAAGTGAGAGACAAAAGTAAAGGTGCTTTGGTAGATTACCTCCATTTGTATCCCTGCTGGCCCTATTGTAGGTATTTCTGACCCTTCTAAGTGCCTGTTCCAGCTGCCTTGGGTGTATGAGTACATGAGTTTTGGGTGCTGATGAATGGTAGCAGCTGGAGAAGTTCATCCAAAATTCAGTTTACCATAACTCGGAGCAAAACAACTCTGTTGCAGCTCTCTGGAGCATTTGATCCATGAGCAGAGCCTCTAAGTCTGCCTAAATCCTGGCCCCATCTCAAAGGGCAGATTGCAGGCAGGCTTGCAGCAGCCCAGTGTTGGTGGTGCAGTCAGTGCGTGCTGCCCTGGGTTGTGCTGGCACTGTGGGATGGATAGATGGACAGACAGACGGATGCTGTTCCCGTGGCTCTGAACATCCCTTGGCCCACTGACATGCTGAGTGTGGCATTGGTAATCCAGTGCCTGAAATCCAGTTATCCAAATAGGATTTTCTCCTGCCGGTGACAGTGGGATTTAATGGAGAGGTTTTGGCTCTGCTCACGGTTGTAATCCGGTTGCTCAGGGCACTCAGGCTGTAATTACCCTGGTGCAAAGTATCTCTGAACACAGCAGCTTACATATTCCTTCCAAGGGTGCTCGAGTGGTGTCCCTGGAGCCACCAGGCGGGCTGTGCTGCAGCCACATCTGCTTTTTCTGTCCGTGTCCATGGGAAGGCACTGCAGTGCTGGACAAGATGCAGGCTCAGCCTCTGAGCATCCCTGGGACCAAAGCTGTCACCTCTCTTTGGGTCCTGTGGTGATGACTGAGCACTGGATGGGGCCAGCATCTGATGGGCTGTCCTTTCTCCCTCCCAG
Seq C2 exon
GTGAGCCACCACCCCCCAGCAGCTGCCCACCACGTCTTCTCCAAGCGAGGCTGGACGCTGTGGCAGGAGATCACCATCGCCAGCAAGTTCAGGGGCAAATACCTCTCCATCATGCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.4=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAATGAGCCGCTCTCCATG
R:
TGGAGAGGTATTTGCCCCTGA
Band lengths:
349-1999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]