MmuINT0113597 @ mm10
Intron Retention
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3712459-3714716:-
Coord C1 exon
chr11:3714471-3714716
Coord A exon
chr11:3712580-3714470
Coord C2 exon
chr11:3712459-3712579
Length
1891 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TCCAGCCGGTCTGGTCCCAGGTG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCCCTGTCCATGCTCCAGCGACTTACAGAGGACCTGGAGTACCACCACCTGCTGGACAAGGCGGTGAACTGCACCAGCTCGGTGGAGCAGATGTGCCTGGTAGCCGCCTTTTCTGTGTCCTCCTACTCCACCACGGTGCACCGCATCGCCAAGCCCTTCAACCCTATGCTCGGGGAGACCTTCGAGCTGGACCGTATGGAGGACATGGGCCTGCGTTCCCTCTGTGAGCAG
Seq A exon
GTACGGACAGCTACTCATCCGGCCAGATGCTACTTGTCAGGCTCGTGGTCAGAGTGAGACAAATGGGCTACAGCCTGCGAACCGGACGGAACCTTCAGTTCATGTCTTGCCATGAGGGGTTTCTCTGGGTAGCTCTGAGGGGCAATGGACCCCTCTTGGCAAGGTCAGGTCCAAAGTCTCCTAGACACAGTGAGAGGCATGGGAGGAGAGTCTGGCGAGATAGGGTCTGGCTGGTGATGGGAGGGAAGGACTAATCCCCCAACCAGGGATTAGTGGAACCAAAATAGAGGGTAGTTTACAGGGTCACTAGCAAGTGTAGACAGGCTAGAGCATAGGTCACCACTGAGCTAAGTGTCAGGCAGCGGCCTGGGACATGCATATTGGGAAGGACACATCCCTGGTCAATATCCCCTCTACCCTTTCCCCATGAAGATAAGTCAGCTCTACCCATGGTCACATGGTAGCCTGATGCTGAACCAGGGCACATTTTGAGTAGAGGGCCCAGTGCTGTAGGGCTGCTCTGGGGGCCCCGGGGTTCGGCCAGAACCCTGAAAGTCACCTGAGCAGGCTGCAGCTTAGAGATGCTCCAGGACCCTGTCAGGTGATAGCAGTAACCAACACAAGGTCACAGTGGCTGAGTGTGAAACAGGGACCAGGAAATACGCTGATACTTCAGTTGTGGGGCTTGGGGGTCCCCGAGTCTTCTCATTCAGTCAGTGGCGAGTGCCCTAGAGGTGCCGGAAGACACAGTGGGGACTGGAAGACACAGAGGTCTTGTTTGGGGTGAGGGTGGGGCGCAGGGTGTTAGGTGCTTCTGGCTGTTTAGGCAGTGTGGTCAGCTGACGGGCTTGGCTGTGCATGGTGGTGGAATACGTGTGGTCAAGCAGACGGGAGAGGGGCAGATGGAAGAGACAGTAATCATGGGCAAGCACTGGGCTCACTTAATCCCTGAGGCACCCTGCAAAGTAAAGAATCTGGGCCCAGACAGCCTGGCAGTTGTGGAATTGGGGTGGGGGTGGGTCATGAAGAGTTGATGGCGCTGCCACTCTAGGTAGGAAAAGGGACATCAGACAGGAATTGTGGGGCAGGGTAGCAGACAAGGGTGTTCTGTGCCGTAAGAGGAAGGCCTGTGGTACTTGGGGCCTATGGTGGGACACTGATAGGACTCCCACTCCAAAGTCAGGCCAGAGTCTTTCCAGAATATGGTTCCACCAGTCTGCCCTTCACCTATTTGGGACTAGCCTGAACTACAACCTACCAGGCATGTGTCACCTTAGTTACTTTTATATTGCTGTGATAAAATACTTTGAAGAGAAGATTTAATGGGGCATATAGTTATGGATTAGCACTTACACCATAGAGAGTCAGGGTTTCTGATGGTGGAGTAAGGGGCAGGGAGCAGCAGGACTGGAGCACCAGCCAAGAGCTTACATCTTGATCCACAAGCACAGGCAGAGAAAGAGCTAGCTAGGAATGGCATGCGCCTTTTGAACTTCAGAGCCTCCTTGAACAGGGCTACAGCTCCTAATCCTTCCCAAATAGTTCCAAGCATTCAAACACATGACCCCAAGGGCTCATTCTCCTTCAGATTGCCGTATGTGGTAAGGGTTAAATGTGGTGGACAAGAAACCCTCAGGCAAGCAGTCCTTCCAGTTCCTGGACACAGACTCGGCTTCTCCACCCCACGGTTTCCTAAGAGCCAGGCAGGGGCTTCTTGTCCACTCCACACCCCCATGGGCTAGGCAAGGTCAGGGTCCCTAAGACGAGCAGTAGCCGGGCTTATTCCTGGGACACACGGGATGGAGCCATGCATCCTGGACATTTGGAAGGCTGTCCTTTCCTGGCTGGGTCTGTGTCTCCCTATGCTCATATCCAGCCGGTCTGGTCCCAG
Seq C2 exon
GTGAGCCACCACCCCCCGTCTGCTGCCCACCACGTGTTCTCTAAGCATGGCTGGAGCCTCTGGCAAGAAATCACCATCGCCAGCAAGTTCCGAGGGAAATACATCTCTATCATGCCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435:ENSMUST00000070552:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAATGAGCCCCTGTCCA
R:
ATTTCCCTCGGAACTTGCTGG
Band lengths:
342-2233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types