RnoINT0105700 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83952237-83953713:-
Coord C1 exon
chr14:83953468-83953713
Coord A exon
chr14:83952358-83953467
Coord C2 exon
chr14:83952237-83952357
Length
1110 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTAGCTTGGTCTGGTCCCAGGTG
3' ss Score
5.44
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCCCTGTCCATGCTCCAGCGACTTACAGAGGACCTCGAGTACCACCACCTGCTGGACAAGGCGGTGAACTGCACCAGCTCTGTGGAGCAGATGTGCCTGGTGGCTGCCTTCTCGGTGTCCTCCTACTCCACCACCGTGCACCGCATCGCCAAGCCCTTCAACCCGATGCTGGGGGAGACCTTCGAGTTGGATCGCCTGGAGGACATGGGCCTGCGTTCTCTCTGCGAGCAG
Seq A exon
GTAAGGTCAGCTATTCATCTGGCCGGGTGACAAATGGACTACAGCTTGTGACCCTGATGGAACCTTCAGTTCATGTCTAACTGGGCAACTGGGCCTCTCATGGCAAGGTCAGGTCCAGACGCAGAGAGGGGCATGGTGGGAGAGCCTGGTGAGACAGTCATGTCTGGCCATAGGAGGGAAGGATTAATCCCCCAACCAGGGATTAGTGGAACAAAAATAGAAGGTAATTTACAGGGGTCACTAGCAAGTCTAGACAAGCTAGAGCATAGGTCACCACTGAGCCAAGTGTCAGGCAGCAGCCTGGGACATGCATATTGAGAAGGACACGTCCCCGGTCAATATCCCCTCTATCCTTTCCCCATGAAGATAAGTCAACGCTACACACGGTCACATGGCAGTCTGATGCTGAACCAGGACACCTTTCAAGGAGATGGCCCAGTGCCGTAGAGCTGCTCTGGGCCCCATGATCAGCCAGAAGGAACCCCGAAAGCTGCCTGAGCAGGCTGCCAGTTTAGATATACTCCAGGGCACGCAAGGACTTGTCAGGTGGCAGCAGTAACCAACACAAGATTATGGTGGCTAAGTGTGAAACAGGAATTGGAAAATTTGCTGACTGACACTTTAGAGGTGGGGCTTGGGGATCTCAGAGTCCTTGGCCTGAACCCCTCTTCCTCATCCAGCCAGTGGTGAGTGCCCTAGAGGCTCCAGGTGCAGTTCAGACACCGAGACACAGTGAGGACTGCAAGACACAGAGCTCTCATTGTTCGGGGTGAGGGTTTGGGGCTCAGGACGTTAATGTCTAGCTGTTCAGGCAGAATGGTCAGTTGAAGTGGTCACGGCAGTGCATGGCGCTAGAGCACACGTGGTTAGACAGAAGGGAGAGGGGCAGATAGAAAAGGGAGACGATAATCACGGGAGAACACGATAATCACTGGGCTCACTGGATCCCTGAGGGGAGTTTGGGGACAAGGCAAGGTTGTGCCGTGAGGCACCCTGAAAAGAGTCTGGGGCAATACAGCCTGGCTGTTGTGCGGTTGGGATGGGGGGCATGAAGACCCCTGGCTGGGTCTGTGTCTAGCTATGCTCATACCTAGCTTGGTCTGGTCCCAG
Seq C2 exon
GTGAGCCATCACCCCCCGTCTGCTGCCCACCACGTGTTCTCTAAGCATGGCTGGAGCCTCTGGCAGGAGATCACCATCGCCAGCAAGTTCCGGGGGAAATACATCTCCATCATGCCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAATGAGCCCCTGTCCA
R:
TGTATTTCCCCCGGAACTTGC
Band lengths:
345-1455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]