BtaINT0105974 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71421655-71423225:+
Coord C1 exon
chr4:71421655-71421778
Coord A exon
chr4:71421779-71423121
Coord C2 exon
chr4:71423122-71423225
Length
1343 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CTCTTGTTTTCCCCCTGCAGACC
3' ss Score
12.45
Exon sequences
Seq C1 exon
CGTAGCAGTATATCAAAGCAGAATTCGTTTCAAACCGGAAGCAATTTATCATTTTCTTGTGGTGGTGAGACTCGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
Seq A exon
GTAGAGTGACTCAAAACCTCTGCTTCTTTCTGTCGAAAACGTCTGCTCATAGATTTTCCTTATTCCGTTTATACTCCAGGTGAATTTATATTCTCCCTCTAGACTGGTCTATGTTCCCTGTCAGATTTTGCCTATGAAGATCTGTGCTCATTATAAACAAAAGACACTCAGAGTTTCATGTCTTCCCTTGGGGGTGTGTGCGAGTAGGTTTCCTTTTCTGTGCTTTAAGCAGCGATGCCCAGTTTCCACATAGACTGCTAAATCACAGAATCACAGAATTTTGGCTTAAGTGCCAAAAATGATTCTGATATGCATCCAAGAACTTATAAATCACTGTTCAGAGGTGAGTGGGTGAATCAAATGGAGATTCCTCACCAAACAGGTGTTCTCTACTCTGGCTGCACATTAGAATTGCAAGAGAGCTTTTAAAATGCCAGGATACCCATGCTCAGGCCCCTCTCCCAGAGAATCCCTTTAAGTTAGTGCGGGGTGGGGCCCTGGCATCGCTAGTTTTTCACAGTTCCCAAACTGATTCTGGTAAGGCGTCACTCTTGCCATAAGGAAGCTCAGTGCTCTCAACCTTAGTGAAGAATCACCTATGGAACTAAAAAAGAAGTCATCAGTGAGGTTGGGAGTATTCTGACTTAATTAACCAGGGATGAGACTTTGACATAGGTAATTTTAAGAACCTCACCAGTTGATTTTTAAAACATAGCCATGATTAAGAACCACTGTCAGAGAAAGATGCCTGAAAATTGCATTTTTCTCTGTTGAATGCAGATAGGATCACATCTGGGGCCATGAAATGTTGCCCTCGATAAATATGAGCAATAAAAGAACTCTGCATTTATCAACTTATTTAACTCAACTGTCCTGTGAGCTCACAATATCATTGTCCCCTCGTGGACTGTAGCCTGGCAGGCTCCCGTCTATGGGATTTTTCAGGCAAGAATAGTAGAGTGAGTTGCCATTTCCTACTGCAGGGGATCTTCCGCACCCAAGTGTTGAACCCTCATCTCGTGCATCTCCTGCATTGGCAGGTGGATTCTTCAGCACTAGTGCCACCCGGGAAGCCTGTAAGGAAACTGAGGCACAGAGAAGTTATGTAATGTGGCCACGATTCAGTTTGTTAAGTACATTCAAACTGAGGCAGCCTGGTTCTCTAGATCTATGCCCTTAACCACAAGTCTACTGCCCCTCCTATAAAAACGGAAGTAAAATTTCCTAGCTTTACATATGTAAAAACAAATATAGATAGATGAGAAAAATAGCCGGCTCTAGTACAGTGAAGGTTGAACGCAAGACAAGGGGCTCTTACTTCTCCTCTTGTTTTCCCCCTGCAG
Seq C2 exon
ACCTGGCACACTGTCATGCCTACCTGGTGGAGATGAGCCAGCTTCTGCAAAATATGGACATCCTGCATCGGACATATTCGGCACCAGCTATCAATGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTATATCAAAGCAGAATTCGT
R:
TGGATGGCATTGATAGCTGGTG
Band lengths:
224-1567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]