DreINT0108837 @ danRer10
Intron Retention
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21535229-21535539:+
Coord C1 exon
chr16:21535229-21535340
Coord A exon
chr16:21535341-21535435
Coord C2 exon
chr16:21535436-21535539
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TCTTTCTCTCTCTCTTTAAGAAC
3' ss Score
10.65
Exon sequences
Seq C1 exon
CGTGCCTCTCTTGCAAAGCAGTCTTCTCTCCACTCACCTGCACCATTTACCAGCCAGGCCAAGGTGACCGCCTGGCTCCAGTCTTCAGACGACATGGACAGGTGCACCAAAG
Seq A exon
GTACACACACACACCTATTTATGAAACCATCTTTTACTAAAGATGCTGCGTCTGCAGCTTTTGACTGCACAATGTTCTTTCTCTCTCTCTTTAAG
Seq C2 exon
AACTGTCTGTATGCGAGGCTCAGTTGCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACATACTCTGCCCCAGCAATCAACGCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482:ENSDART00000145886:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACTCACCTGCACCATT
R:
GGCAGAGTATGTGCGGTGTAA
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]