MmuINT0113681 @ mm10
Intron Retention
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50346328-50347489:-
Coord C1 exon
chr6:50347366-50347489
Coord A exon
chr6:50346432-50347365
Coord C2 exon
chr6:50346328-50346431
Length
934 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
ATCTGCCCTTCCTCCCACAGACA
3' ss Score
12.71
Exon sequences
Seq C1 exon
CGTAGCAGTCTATCAAAGCAGAATTCATTTCCACCCGGAAGCAATTTGTCATTTTCTTGTGGTGGCGACACTCGAGTTCCTTTCTGGCTACAGTCTTCAGAGGACATGGAAAAATGTTCAAAAG
Seq A exon
GTAGCAGTCTGACTCTTGGGTCTCTTTTTGCCATGGCGCTGCGGTGACATGTTCTTGGCGTTACCTTCACGTACATTTGAGTCCCTGCTGTCCACTCCTCCGCATTTCATCCCTTACTCTACTAATGAAGGTCTCGTCATCATCAGCCCGCATGCTCTCCCCACAGAGCTTAGCATCTTCACCTGGATGCAGACAGACTTCCTAGTCTATATTGTTTTTAATTGTGTTTGTGTGTGGTGTGTGTTGGGGGTGGGGGGTGCATGTGAGCGCAGATGCCCATAGAGCCTAGAGAGGGCATCTGATCCCCTGGAACTGCTCCATGTGGTGAAGTTGGGCCCTTTGAAGAGTAGTAGACACTCTTAACCTGACTGCTGAGCCATCTGGACCCTTTAAAATGTGGGGGTACCAGTGCGTGTGCCTCTGTCCCAAACATCCTGTTTAAATTAGTCTGGGGTGCTGCCCTGGTGACCTCGGTCCCAACACTCCTAGAGTGAGTCTGACAAGGAGGCAGGATTGATCACTCCTGCACAAGGTAACTCAGTGTTTTTTAACCCTAATTAGCTAACCTTAGAGCCAGACTGAGGTTTCCAGTGGGAGAAAGAACTCAGGCTTAATTGTATAAGGTGAGGCTTGGAGCGTATGGAATTGAAAAGTTTTAAGTTAAAAAGAAATTGAGTGCTGGATAGTTTGGTTTATAGAGCACTTGCTGTGCAAGATGAGAGTCTGGGGTTGATATCCAGAACCCACAAACAAGGCCAGATGTGATGGTGTGTGCTTGGAATCCAAGCCCTGGGGGGCTGGAGATAGGTGATTCCTATATGATAAACCGCTAGGAACTATGGCCTTTCCTGTGGGGTAGTCAGATATGGAACACAGAGCCTGGTGCTCTCCGGTGCTGTTGGACAGTGGTGAGCATCTGCCCTTCCTCCCACAG
Seq C2 exon
ACATGGCACACTGCCATGCCTACCTGCTGGAAATGAGCCAGCTCTTAGAAAGCATGGACGTCCTGCATCGGACATACTCGGCGCCAGCCATCAACGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822:ENSMUST00000071728:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGCAGTCTATCAAAGCAGA
R:
CTGGATGGCGTTGATGGCTG
Band lengths:
228-1162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types