GgaINT0097795 @ galGal4
Intron Retention
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31808150-31809125:-
Coord C1 exon
chr2:31808999-31809125
Coord A exon
chr2:31808254-31808998
Coord C2 exon
chr2:31808150-31808253
Length
745 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TATTCTCTTGTTCAAAGCAGATC
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
Seq A exon
GTAATGACATTTGAAGGAAGATGAAAATAAACTAATGTTTCTCCTACTACTTCTTGACAAAGACACTACAATAGCATAAGTAGTCATTACAGTTTTTTTCTGAAACAAGAAGGAGGAAAAGGGTAGTTGTTGATTTCCTGCCTACTTGCTTGTTTTCAGAAGAGCTAGTGAATGAAGAAGGTACCAATTTTGAGGATCTCTTAAAGGAATCTATGTAGTCCAATATATTTTCTTTTATGAACATCACACTTGTTAGTAAAACTTGAACTGTCTTAAGCTGGGTTCCAAATCACCTTCTGCTTTCTTTCATGCTTTCCTGAAATAAGAAACATCTTTTTAATATTGGTGAAAGCATCTGTATGATGCATGTTTTCTGGCTACCAGGAGGTGTCTCATTTCTAGCTCTGCATGAACTGTTCAGTCTCAAAGACCATGGCATTGTTACTCCCTCCATGAGTAACTGGTTTGGGTAACTAGTCACAAACAGCAGCAACTCACTTTATCTTGTATTTCTACAGTCAACTATGACAAAACACTGTATATCACTGTACAGGCTCTATAGAGGCATTTTAATATTTTGAAGACAGAAGGATACAAGCTATTTTAGCTGTTGTCTACTGCTCTGTTTTTTGTCAATTAACTTAAACCAGCTACAATCAAAATAAAACTAGCCTATAAACAAAAAAACCCTTTCACTATATTTGTTACTTCAGAGCTACTGAAAATATTCTCTTGTTCAAAGCAG
Seq C2 exon
ATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGCTTGACCAAACAG
R:
TGCATAGCATTTATAGCAGGTGCT
Band lengths:
230-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]