GgaINT0097795 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31605023-31605998:-
Coord C1 exon
chr2:31605872-31605998
Coord A exon
chr2:31605130-31605871
Coord C2 exon
chr2:31605023-31605129
Length
742 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
AAATATTCTCTTGTTCAAAGCAG
3' ss Score
3.08
Exon sequences
Seq C1 exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
Seq A exon
GTAATGACATTTGAAGGAAGATGAAAATAAACTAATGTTTCTCCTACTACTTCTTGACAAAGACACTACAATAGCATAAGTAGTCATTACAGTTTTTTTCTGAAACAAGAAGGAGGAAAAGGGTAGTTGTTGATTTCCTGCCTACTTGCTTGTTTTCAGAAGAGCTAGTGAATGAAGAAGGTACCAATTTTGAGGATCTCTTAAAGGAATCTATGTAGTCCAATATATTTTCTTTTATGAACATCACACTTGTTAGTAAAACTTGAACTGTCTTAAGCTGGGTTCCAAATCACCTTCTGCTTTCTTTCATGCTTTCCTGAAATAAGAAACATCTTTTTAATATTGGTGAAAGCATCTGTATGATGCATGTTTTCTGGCTACCAGGAGGTGTCTCATTTCTAGCTCTGCATGAACTGTTCAGTCTCAAAGACCATGGCATTGTTACTCCCTCCATGAGTAACTGGTTTGGGTAACTAGTCACAAACAGCAGCAACTCACTTTATCTTGTATTTCTACAGTCAACTATGACAAAACACTGTATATCACTGTACAGGCTCTATAGAGGCATTTTAATATTTTGAAGACAGAAGGATACAAGCTATTTTAGCTGTTGTCTACTGCTCTGTTTTTTGTCAATTAACTTAAACCAGCTACAATCAAAATAAAACTAGCCTATAAACAAAAAAACCCTTTCACTATATTTGTTACTTCAGAGCTACTGAAAATATTCTCTTGTTCAAAG
Seq C2 exon
CAGATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGCTTGACCAAACAG
R:
TGCATAGCATTTATAGCAGGTGCT
Band lengths:
233-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]