BtaINT0106589 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11752332-11754657:+
Coord C1 exon
chr22:11752332-11752396
Coord A exon
chr22:11752397-11754604
Coord C2 exon
chr22:11754605-11754657
Length
2208 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CGTTTTGTTTTCTTCCATAGGAA
3' ss Score
12.61
Exon sequences
Seq C1 exon
GCTCTGTCTTCAGGAGCAGGTTCACAAGAAACCAAGATCCCAATCAGTCTAGTACTAAGATTACG
Seq A exon
GTAAGTAAGACATTTGTTGTTGTTCTTTTCTAAATACTCTGAATGTGCTGGTTTCTCTTTGGAAGCTACTCCTTCTCGTAGTGCATGCCTGAGAGGAACTGGATAGAACTGTGTGTGTTTTCTCTCAGGTGTTTTATTGCCCTCAGATATAATAGCAGTAGTGTGAGGATCTGAGTTACCATTGACTCACCCCTCTTTCCACATGTGAATTCCTAGTCATCTCAGTATGACCAGAATTAGAGCAGAGGCAGCAAGACCTATTTGGGGAATGTTCTGGGGGTTTTTTGAACTAATTATTTATTTTTTGGAGAGATGGTTAAAATTCAGATTTTTATTTATTTTTTTGAACTTTTTATTTTGTATTGTGGTATATAGCCAGTTAACAATGTTGTGATAATGTCAGATGAACAGCCAAGGGACTCAGCCATATGTATACATGGAAGTGCTCTTTCCCCATACCACCATCTCTCATCCATGCTGCTACATAACGTTGAGCAGAGTTCCCTATGCTATACAATAAGTCCTTGTTGGTTATCCATTTTAAATATAGCACTGTGTCCATCTCAGTCCAAACTTTGTTATTGTCCCTTTGGAAAATGTTTTGATTTTACCACTAGGAGCAATGAAATTATGCCATAAACGTGAAGAAAGCAGATTTGGCTACCTTTTCTTTATAGAAGCCTATACTGTATACCTGGACCCAGATAGTTCTGATCATACAATGTCTTGGTAATTTCATCCTATTTTAATTGTGTACAAAGAATACTACTTGTCTGTTTTAAACATTTTGTTTTAAAATCTTAGATCAGTTAATAGAGAGTATGAAATATTACTTGACATATGCTTCAGAAGGGGAGAGGATGCTTGTAAGTGATGCAGTTAGCTTTTTGAAGGGTGGTTTTTAATGGACTGTGTTCCAGACTTGTTTATGGAAGAGGAGGCTAGAGTCTTACTCTCATTGATGAAGACTTTGAAGTTCAGTTTAGTATATTGTTATCTTTGAAGGTGTTTGTACTTGGCATGACAGTCACATCACAAAAGTGATACTGAACATTTGACCTTAATTTTATTTAGCTTTCAGAAAGAATAGATTGAACAATTACATATTAAGCAGACTAAGTACAGCACTATTAGCTATTGTGCTAAGACCCTGAGAAAGGAGAAAATGAAATGCAATAATCAAGTCTGTGTTGGAAGTTGATTTTTATTATGTACTTAACTGAACTAGCATAGCTGAAAGCAAGTTTTAGTAGTAGATATGCAGCGAAGTATAAGTCCATGTAGACAAGTGCAGAGAGGCAATGAGAGGGAGAAAATCCCTGTTGGGCAGGTTGTGTGGAATTTGGGGAGCTGTGTTTTAAGCACGATTTCAGTAACATCAAGCATGTGTCAGATAGACCTACGCCCTCTACATCATTTAGATAAAATGGATTCGGGTCCTAAGTGATCAGGCACATCTGCCTTTGTGCATGGTATTCTAATTTCTCCATCTTTAACCAGAACCTCCAGGGAGCTTGGTTAATCTCAGTACTTGGTGTGGTGAGCGATCACTGTAACTAGCCCTCGTCAGTCACATTTTAATCTCTGGAGCCTTATGCTAACTCTCCTGCCAGTATGGACCCCATTACGGTCTCCGTCTTCTCTCCATTCCCAAAGCCTTCTGTCCATTACATCCTATCTAAAAAAACTACTAGTATTTCTAAAGTTTCTCCTCATTATCCCAGTCTGTATATTCTTTATCCTTCTCCTCTGAACCCCTGTGGAATTGAGGGCGCATCACGTATTTCATCCTATGAGTCTGCTCAGACTGATCCCCAGTGGTGGGCAAGGTACTGTCCTCGGCGGGGGGGTGTGGGGGGTAGGAGTGGAGATGAGGAAGAAAAGAGCCGCCTCTCATTTTAGTCACACCTCCCTGTGCTCTTTCATATATCCCTCTTAGTTTAATACGGTCTTGTTGGGTGTAAGGATGAGAGTGGGCATATATTGACCAGTGAAGGACCTAGATTAAAAGAGTTGTAGGACAGTTACTAATAAATGATCACTCTGAGTTGTTTGCTCTGAGCCCTCAGTGTGAGCTCGTTAGGACAGATCATCTGGTCTTTGGTACAGAAAGATCTTTCTCTTGGCATAACTTTCCCGATATATGTAGGCAGACTCTGAATGTATAAATTCAGAAATTTATTTTACACGTTTTGTTTTCTTCCATAG
Seq C2 exon
GAATTCAAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.526
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PU(21.9=31.8)
A:
NA
C2:
PF122023=OSR1_C=FE(56.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]