MmuINT0114250 @ mm9
Intron Retention
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119153774-119154724:-
Coord C1 exon
chr9:119154660-119154724
Coord A exon
chr9:119153827-119154659
Coord C2 exon
chr9:119153774-119153826
Length
833 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCCTTATTCTGGTTTAATAGGAA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GCTCAGTCTTCAGGAGAACGGTCCCAGGAGACCAAGATCCCTATCAGTCTAGTGCTAAGATTAAG
Seq A exon
GTAAGTGAGCATTTGCTGCTTCGGAGTACTCTAGAGATGCTGTCATCGCTGGGCCTTAGAGTATGCTACTGCAGAGTACTGTGTGTTTCCAACATGAATTTCTGGTTGTTTGAGAATTCAGCTCTTAACAGGTTTGTTGACTGCCATGCATATCTGCTTAGCAAGGAGCAGCATGTGCATTTACAGTGTTGCCATCTGGGTTGTAATGGAGGATGCTGGGGCAGTGGCAATGTTGGCTGCTCCTCTGAGGAGGAATCTGACGATGGGGTTTGTGGGCATATGAACTCAGGACAGGCACTTCATGGCTGTGATTGAACAGCCTGCGAAGAAGTTTGTAGCTTCTCTGTTTTACTGCCTGTGTTGTCATTGGTTCATGGTGGGATGCACAGAAAGGCCTAGGGAGGTTGCTCAGGAAGAGACATCATTGGTATCAGATCTGTGTTTTAACCTTTCCTTACTAATAGTTTGGATCAAGATTCTATAATTTTCTTTGTAAAATAAATTTGGATGTTATATTGTTTCTTTATAGTCATAAATGAATATGAAAAAAAATAGCTCAAAGACAGGCTAGGCCTTCTTTCAGTGTTAAAGAATGCCATTTGAAGTACCACGTAGTAGAGGACCACACAGGAATTATAGGTAGAGGTCACAAGAGCTGTTTAAAATGGTTTCTACTGGGAACAGTGAAATTACATCATCAACATTGAAAAGCAAATGTGGTTATTTTCTTTCTCTAGGAAGTACTCAGTGGTAGATGCCCTTACCTATGGCACTGTACAGAGAGTGTAAGCATATATTCAGAAATTCTTATTTTCCTTATTCTGGTTTAATAG
Seq C2 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-Oxsr1:NM_133985:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.526
Domain overlap (PFAM):
C1:
PF046377=Herpes_pp85=PD(9.0=38.9)
A:
NA
C2:
PF122023=OSR1_C=FE(56.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: