DreINT0109294 @ danRer10
Intron Retention
Gene
ENSDARG00000034189 | oxsr1a
Description
oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
Coordinates
chr2:24061116-24062254:+
Coord C1 exon
chr2:24061116-24061186
Coord A exon
chr2:24061187-24062201
Coord C2 exon
chr2:24062202-24062254
Length
1015 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
GAATTTTTGTTTTTTAATAGGAA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GCTGTTGCTGGACCAACTACGACGGGGCAGGACTCAGCTAAAATCCCTATTAGCCTGGTCCTTAGATTGAG
Seq A exon
GTATTGGCATTTTAGAACTTTTCGAATGGGCACAGAAGTGTAAAGCAATCGGAGTGATTAGGTTTCAACTGCATTAATTATGAGCCTCAAATCTAACCGTATTTAAAGTGATATTGAAATGTGCTTTACAGATACTTGTTCCTCTCTTATTTGTGCACGTTTTGCTTGCTTGATGGCTTGCTTTTTAAACTCTTCACGCCGTTGATGATATTTTTGGTCATTAATGCTTACTTGTATTGCTGTTATAAAGGATTAGCCTGTTTCACATTTTTAGTAATGCTATTCAATCTCTAGGCCAAAAAACAAGCGATGGAAGCACGTGTTGACCCAGAATCTAGATGTAATCATGCAAAAATTTGAGATTTTTCCGAGATTTCTTTTTATTTTAGCTGATTTATTTTGACAGTTTGTCAGATGACATTTATAAATATTTTTTTCAACAATTGATCCATTCAAGAGATTAGAAAAGCTAATTTAGCCAAGAAACAGCCTTTGTGTAGTATAAAATCATTCATTCAAATGGAGCTTTTAAAAATAAATGTAATTAACTAGCTGTCAATTCAGAATTGTGAATAATTAATCACAATTAATTCTCTATTTTAGATATTTATGAAAAAATGGAGAAATGTTATTTTCTTATAATAGTTGCATTGATTAAAATAAAATACAGCACATTTCAGATGCAAAAAAACCTTGATATTTCAGTATTTAGTGGTTAAGATACTCATTATGGCAACACATATTTCAGTTTATCGCTGTAAAAAAAGGCAGGTTATTTGTGATGTGTATGTTTTTTTTTTCCTTATTAATTTAAATACTGTATAAAATACAAATTATAAGATGTATTAAAGTCTCGTCTTCCACCTTTTTTGTCCTCGGCTGATCACATACCTGCTATGGCTCCTTACTGATATATTGAAGTAATAAAATGACTAAAATGGAAATAAATAAAAAAATAGGAAATAAAAAAATTCAAAGATCACTGCTGATATCTCGAATTTTTGTTTTTTAATAG
Seq C2 exon
GAATACAAAGAAAGAGCTGAACGATATCAGATTTGAGTTCATGCCAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034189:ENSDART00000047073:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PU(21.9=29.2)
A:
NA
C2:
PF122023=OSR1_C=FE(56.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]