RnoINT0106332 @ rn6
Intron Retention
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127932693-127935758:-
Coord C1 exon
chr8:127935694-127935758
Coord A exon
chr8:127932746-127935693
Coord C2 exon
chr8:127932693-127932745
Length
2948 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCCTTATTCTGTTTTAATAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
GCTCGATCTTCAGGAGAGCGGTCCCAGGAGACCAAGGTCCCTATCAGTCTAGTGCTAAGATTAAG
Seq A exon
GTACGTGAGCATTTGCTGTTACTAAGCATTCTGTAGATGTCGTCAGAGTCGGGCCTTAGAGTATGCTACTGCGTAGTATCGTGTGTTTCCAACAGAGTTGTTGGCTGGTGTTTCAGAATCCTGCTCTTAACAGGCTGTGCGACTGCTGTGCATACCTGCTTAGGAGGGAGCAGCGTGTGCATTTGCAGCGTGGCCGTCAGGGTTTGTAGTGGAGGATGCTGGGGTAGAAGCAGTGCTGGCTGTTCCTCTGAGGAGGGGTCTGATAATGGGGCTTGTGTCATATGAACACATAGGACAGGCACTTGATGGCTGTGATTGAACAACCTGCCAAGAAGTTTGTAGCTTCTCTTTTTACTTGGGTCATGGTGGGGTGAACAGAAAGGCCGAGGCAGATTGCTCAGGAAGAAACATCATTGGTACCATAGCTTATCCCTCAACCTTATCCCCAATGGTAATAGTTGGGATCAAGAGTCTATAATTTTCTTTGTCAGAATAAGTTTGGGTGTTACATTGTTTCTTTGTTGTTATAAATGAATATGAAAAAAAATGAGCTCAAAGCTAGGCTAGGCCTTTTAGTGTTGAAGTACCATGTAGTAGAACACCACACAGGAACACCGGGCCAGCTCTGTAAAGTTAGAGATGGAGACCACAGAGCCGTTTAAAATGGTTTCTACTAGGAACAGTGAAATCACATCACAGACATTGAGAACGCAGGTTTGGTGACTTTCTGTCTATAGGAAGTACCCATTTGTAGATGAAGAGGATGCCTCAGTGCCCTTACCTATCACACTATACAGAGAGCGTGCCTGTCTCCAGGGTATCTGTGTTGAGTCTCACCACAGTAGACATATGTGCCTCGGGAGAATGTGGAGGACACTGTGGGTAATGAAGCCTCTGTTCTCTTGAGAGGGACTTCTTCCTTTATTTTCTTGTTGTTTATTTTAGTCTGGTTTGTGTTTGTTTTATGGTGTTTTTGAGACAGGGACTCACTGTATAACCCTGGCTGTCCTGAAACTTACTATGTAGATAGATCATGCAGGCCTCAACCTCACAGAGAGCTACCTGCTTGGCCTCCACAGTGCTGGGTTAAAGGTGTATGGGACTGTGCCAGCCAGAGTGGTTGTTTAAGGATCACTTTTTCACAGTTTATGGAAATAGTTGAAAGTTGGGTTCTTATTCCCTTAATGGAGACTTTGAAGTTAAATGAACAGAAGAGATGATAATCACCTGTGGTCCAGGTTGCTGTTTTTATAATTGGAGTGCCAGTCACAGCACATAGTCTCAGTGAGACGTCCTCAAGCATATTATTTGTGAAATAATCTTGGCCCTTTCCCTTGTTTAGGTAAATGGATTTGAATCCAGAGTGATCTGTCACGTGTGCTGTTAGACATCATGTTCTGATTTCTCTACCTTAACTAGAACTTCAGGCTACCTGGATAGTCTCAACACATCGAATGTTGATCACAGCTATTCCTCACCAATCACATTGCTATTAGTATGGCCCCGATTTCTTTTCCCGCCCTCTCTGCCTGTTCAAATCCTCCTCGTCTTAAGTCCCATTTAAAAACTTATCTTGGGGGCTGAAGAGATGCTCAGTGGTTAAGAATGCTGACTGTTCTTGGTTTGGTTCTCAGCACCCACATAAGAATTATCTGTCACTCCAGTCCCAGGACATTTGACAACCTCTTCTGGGCTCTGAGGGCACCAGGCATGCACCTGGCGCACAGACTCTTCTCACATAGAAAGCATGGACAGACAAAACCTACCCCTGAAGCTTCTACCTCTAAAACTTTCTCCTTATCCCAGTCTTATCTGTTCTCTGCACTGTCGGATTTGAAGGAATAACGTGTACTTAGTTCTGTGAGTGTGTTGTAGTGGACAAGTGGGAGTGGGAACACGGGTGGCAGTGTCCTCCAGCATTCGAACCCCTCCTTCTAGTTTTATAAGATTATATGTTCCCCTTCATTTTTTTTTTTGTTGCCAAAACAGAATACCAAAGATTGAGTAATTTATAAATAAAGATATATTTATAATATTATAAATAGAGATTTAAGCAGGTATGTAGCTCGCACCTATAATCCCAGCACTTGGGAGGCTGAGGCAGGAGAATTCCTGAGTGTCTGAGCCAACCCAGGCTAGAGAGTACGATCCTGTCTTAATAACAACAGCAAGTATCCACAACAGAGTCCAGATGTTTGATTTCTTACAATGTAAGCCAGAAGCCTAGAGTGGTGGGGTCTCTGTGCACCTTCATGTTGCTTCATCTTGTGACCAAAAAGACAAGAGTGCACAAGGAAGCAAGAAGAGGCACAGTTCAACTTATGGCCGATGGACCTGCTCACTGTGTTAACCTCTCAGCAGCCTCTCAGTATTGTGCCAAGGACTGGCTTTCCAACACAGTCAGCTTATAAGTCTCATTTAGCTCATAGTATTATCTTAGTGGGATTCAGGGTAGGAATGAGCATGAGTATCCTCAAATTAGAGATTCTTGTGTTGATCAGTAGGGGGATAATACATTCAAAGCCATATAAGGTAATTTGATGGCAATGCTAAAAGTGTTAGTTCAGAGACCTGTAGAATGAGTGTATCAGGAGAAAGTATATGATCTGTGAGAACAGAATAATATTTCCATATGTACATATACATTCACATACATACCCATACATCACATATACATACACATACATATACATACATACATACATACACCCACATACACACATACAGACATACATTCATACACACACATACATGCAGGTACATATAGATGCATACACCCATATGTATACATACGTACACATACATACATACATACATACATACATACATACGCACACATACACGCATGTATATATAGATGCGTACACACATATGTATACATACACACACACTGGCAGACTTTAAGCATAAATTCAGAAATTCTTATTTTCCTTATTCTGTTTTAATAG
Seq C2 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136:ENSRNOT00000018056:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PU(21.9=31.8)
A:
NA
C2:
PF122023=OSR1_C=PD(68.0=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]