GgaINT0091656 @ galGal4
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr2:4909516-4910560:+
Coord C1 exon
chr2:4909516-4909589
Coord A exon
chr2:4909590-4910507
Coord C2 exon
chr2:4910508-4910560
Length
918 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACATTTTCTTCTTTCCCCAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
GCCCCACCTGCCCCCGCTGCAGCTCCGGTACAGGAAGATACGAAAGTCCCCATCAGCCTTGTACTAAGGTTAAG
Seq A exon
GTAAGGACACATAACTGATCTGTTATGTCAAAGTGAGCCTTTGTAGAGAGGGACACTGGAAGAACTTCGTAGTGCATCTTGTTGTGTGTTGAATAGTCATGGCCACATATTGTCAGCTTCGATTCTATCCATCTCCTGAAACTGGGACTAAGAAAAGCAGTTTTCATCTCATTTGCGTCTCCAGTTTGACAAGAACTAGGTTGAAGAAGGTTTTGATACTTGAATACATCTCCCTAAACTCTGATAGTGTGGGAAGGAAGCTGGATTCTCCAAAAGAGGATCAGGGATCCAGGGATCTTGGCCAAGTGCCTCAATAGCCAGATATTCCAACACGACTTCAGTCAGCTGGTTCTGTGATTGAAGAGCTTTTATCCAGTTCAAGACACGGGTTCTGGTTCATATCCCTGGAAAAGGCAGAAAAAGGCTTATAAGTGCACTCTACCATCATTATGCATGTCGACATTTCTCATTGAAGGAATCTGCCTCTCACTTCCGTGGACGTCTTGGTTGTAGATAAGCACTGGGTTGGTTCTTCTGAGCATCGTATCACAGTTGTTCTTGGGCAGGTGCATCCACAGAATGAGAGTGCTTGCTTCCTCTGAACGTTGTGCTCCAGGGATAAAGCTGCTGATAGCTATCAGTTGCTGACAGTGGAACAGTGTGGCCTTGTACCAGAGAACTGGCACTCACATATTGTAAATTTCAGCCCATTCCATGCTCTGTGAAGTTGATTAGTGTTGAGAGCTCAGCTTCTAGACACACAGCCAAGTGAACAGTTTCTGCCATTCAAAGAGGAAGAGTATAGTGAACTTGGTCTTCTTCACAGACCAATTCTTCAGCGGTAGCACAGTGTTCTTTTGAGCATTGCTTAGTGCAATGAAACGTTCTCTTCCATATAACATTTTCTTCTTTCCCCAG
Seq C2 exon
GAATTCAAAAAAAGAACTCAATGATATCAGATTTGAATTTACGCCCGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.579
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PU(21.9=28.0)
A:
NA
C2:
PF122023=OSR1_C=FE(56.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]