BtaINT0106590 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11754605-11756717:+
Coord C1 exon
chr22:11754605-11754657
Coord A exon
chr22:11754658-11756648
Coord C2 exon
chr22:11756649-11756717
Length
1991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTCTTCTTTGTCTTTGCAGATA
3' ss Score
13.12
Exon sequences
Seq C1 exon
GAATTCAAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
GTGAGGCATCAAAATCAAAACATTGAAAACAAAATAACTGCTCATTTGTCATTTGAAGAAACTGTGTGTGAAGTTTCTGTCCTTCAGGTATATTTTACTCTTAAAGGGTGATAAAAATGTTCCTGGCCTAAAGGTTGAGGGTACGTGTGAAGAAAATAAAAATGCAATTTTTTGTTGGTTAATTTTTTTTTTTACAACTACCTCATTTAGAAAATGTAGTATAATACAAGCAGTAGTAAATATAGCTCCAGTTTACTATGGCAGACATGGTGCTAAGCAACATCTCATTAAATTTTCAAAATGGCCCCTAGGGAAAGATTATTGTCCCCATTGCATAGATGATGAAATTAAGGTTTAGAGAGGGTGAAGTAACTGGTTACGGTTCCCACAGCTGAGAAGAGGTGTGAATGAACTTCGGACTCGGATGTGCCGGTGTGCCGAATTCCGGTCTTATGACTGAGCATGTTTGTACTCCTTGACAGTAGGAAACAGCAAGGCTTCCAGTCCCCTCCCTCCCAGCTGAAGCCGAGCCCCGTCACGCATAGTTTCCATCCATGAACTTCTCCCAGGGACAAGGTTTATTATTTTCTTTCTTACCTTTGTTACTCAGAATTCGTATTTGCGAGATGGCTCACAGCTACTGGTGTCTGTCCTGTGTGCACGCTCAGTCTTCCCGCTGCCTCGGTCTCATGAGCAGCTCACTGAAGTGCCGAGAACACAGAACAAATGCACATGTACAGAGATGTATCTGATTTCTGTCTTAAAGCCAGGCAGTCACTCTTTAAGGTCCTCATTCACATCACTGGTCGTCGGCACAAGTATGTGCACAGCCCCTCCCCAGAGGTCCTCTCATTCCCTCTGAGGGCTTAGTGTTCAGGCCTTGGGAAGGAGTCAATTAGAGATGAGGTTAATTGATGGTACTCTCTCCTCATCTTTTTAGTTTCTAGTTGTATGCCCATAGACTGTATGTACTCAGATAGTACAACCTGGGATAACTGGATGTGAAGGAGAGCCTACCAGAATACAGAAGAAAATGATTTTAGGGGGAAAAAAAAGAAGAAAAAAAAACTAATTGCGATCCCCAAAGAAAAGTGATTAAAATTTGTTAAATGTTTAGTGTTAAAATTAAAATTAAGGTTTAATTGAGGGGAATACCCTGGTGATCCAGTAGTTAAGATTCAACACTTTTACTCCCAAGGGCACACATTCAGTCCCTGGTCAGGGAAATAAGAGCCCACAAACCTCACAGTGTGGCCAAAAAAAAAAAAAATTGGGACTCAATCATTGTGTGTTATTATCCCAGGAGATGTGCTACACAGCGTCACATCCCCAAGCTCACAGAGCTGGGCCCACGTTGCCCTCAGACTAGCAGTTTCTTCTGCAGCATCACTGTCAGGAGCTCTGCTGACAAAGGCAACACCCCGTCTAAGGCATGCCATTGTTAAGATGTTATCTTTACACTGAGCTGATACTTGCCATCTGGTTGATTGATCCAGGTTCCGTCCTCTAGCTCGACCTCTGATAGTCCCTCAGTTGAGGTAATCCTGCTGCTGCTGCTAAGTCGCTTTAGTCATGTTCGACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGGAAAGTGAAAGTGAAGTCGCTCAGTCATGCCCCACTCTTAGCAACTCCATGGACTTCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGCGGTGCCATTGCCTTCTCCTTGAGGTAATCCTAGTGGTAGGAAAAACCTTTGTGTGGAAGAAGGCCCCGCCGCCACCACCTTGGGTCTCTGGATTTGGCAGCTAGCTTTAGTCTGGCCGTGCCGGACCTGCTTTGAATTGGCAGGGACATGCATGCACAGGAAAATGGAGCGCTTTCTTCTTTGTCTTTGCAG
Seq C2 exon
ATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCCGGCCTCGTTGATGGAAGGGATTTAGTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
NA
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]