HsaINT0119196 @ hg38
Intron Retention
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38249966-38251471:+
Coord C1 exon
chr3:38249966-38250018
Coord A exon
chr3:38250019-38251402
Coord C2 exon
chr3:38251403-38251471
Length
1384 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCTTCTTTGTCCTTGCAGATA
3' ss Score
13.4
Exon sequences
Seq C1 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
GTGAGGCATCAAATGGATTGAAAACAAAATAGCTTCCAATTTGTGATTCAATGAAATGTGTTGTGAAGTTTCTGTCCTTTGTGAAGTTTTGCTTTTAAAGGATAATAAAAATTTTCCTGGTTTTGGCGAGTATATGAGTGAGATAAAAATGCAGTTCGTTGACTACTAAACACATTTAGAAAACCTTGTATAATAATACAAACAGTAATAAATATATGATAGCTCTTTACAGCTTACTATAGGCCAGGCATTGTCTTAAGCGTTATCTTATTAAATTCTCACAGCAGTCTACTAAGGAAAAATTATTATCCCCATAGTATCGATGATGAAATCAAGACTTAAAGGCAAAGTAACTTGTTCAAGGTCACACAGCTGGAAAGAGGTATAGCTGGAATTCAAACCAGATCTGTCAGAATCCAAAGTTCATTCTTTATACATGGTTGTTCTCCATGATGGTAAAGAAACAAGGTCTGCAGTCTCCTCTCTCCTCAGACAGAAGCTGAGGTCTGTCATGTACTGTTTCTGGCTGTTGAACTTCACCTTGAACAAGGTGTGTTTTGTTTCTTGCCTTTATTACTCAGTGTTCTAATTTGGGGAGTAGCCAGCAAGTATCTGTTCTGTGTATCATGCTTATTCTTCTTGCTGTCTCACTATCATGAGCAACTAACCACTAAAGAGAAAAGATGCAGGTGTACAGAGGTGTCACCTGTTTTACTTTTTAAACACCAGGCAACATCACATTTTCAGGAATTAATTCAAATTGCTGGTTGCCTGTGTGAATGTGTGGACACTGTCTCCACCGCAGTCCTCCTGTTCCCTCTGAGGGGCTCATTTTCAAGCCCTTGGCAACCAATACCACTGAGTTGGTTGAAGATGAGGTTAATTGGGGATATTCTGTCCTCATCTTTTTAGTTTCTGGTTATACCCATTGCTCAGATTGTACCACCTGGAATAACTAGATAAGAAGAAAAGCCCACCAGAATAAAAAAGTAAATGATTTTAGCAAAAAACTTGGAGTATGATTCCCAAAGAGAAGAGACAAAAATTTTTTGAGACAAAAATTGTTGCCTTAGTTTTTGAGAATAAATCATTCTGGTTTTTTAGCCCTAGAGATGTTCAGTATTCAACATCATGTCTCAGATATTTGCTACCTGGTTTATACAGATTCTGCCCTCTAGCTAGATCTGTGAGAATTCCACTTGAGATAATCTCAGTGGTAGGAAAAGTCTTTGTATGGAAGGAAGGCCCTGCCTGCCTTCTTGGTTCTGTGGATTTAGCATCCAGCTTGGGCCTAGCATGGCACACTGACACCCACATGAGCTGTGAGAGTTAACAGTGGCAAGCACGCACAAAAAACAGAGCACTGTCTTCTTTGTCCTTGCAG
Seq C2 exon
ATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939:ENST00000311806:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(73.3=75.9)
A:
NA
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development