RnoINT0106333 @ rn6
Intron Retention
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127924476-127932745:-
Coord C1 exon
chr8:127932693-127932745
Coord A exon
chr8:127924545-127932692
Coord C2 exon
chr8:127924476-127924544
Length
8148 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTGCTCTCTGTCCTTACAGATA
3' ss Score
13.29
Exon sequences
Seq C1 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
GTGAGTATTATAATATATGACTGAGAACAATGATGCCAGTTTGCTTCTTAGGTAGGTATAATAAAGTTTTTGTCATCTAGATAAGGTTTGTTTTTAAAGGACAGTGAAACTTCCTGTCTTAGGTTTTAAGAAATACGCATGAAGGAAAACTGCAATGGATTTACTAGTGATTTCTTTCTTCATCTGGAGATGTGACTGTACTGAGAGTATAGTAATGAGTACAAGCCTTTTAGTAAAGGCCACCGTCAGGCATGCATTTCCCTAAATGTTATCCCTTCAGTTCTTTGTTTTGTTTTTTTGGTGAACAAAGAATGTACACTTAGCCTTAGCCATTGTTGTTAGCGTGTTGTTGTCCTCTGTCTTCTTCATGGCTGACTCGGTGGTCAGTGGGAATTTGATGATGGCATAGTAGTCAAGCTTGTTCCCCTGGGTGCTCTCTTTCCAGGATATTTTGGCTGCCTCTGGAGCCGCAGGGTCTTGGGCCACCGGAAAGTGGGTGACATTTGGATCATCTTCTGTTTGTGGCTGTGGACGCCTTTCAGCACTGCCTTCGTAGCTTCCAAGGCCTTTGTTTTAGCTTCGGCTTCGGCTTTGGGAAGGGGCAGGAGCTTCCTTCGCTTTTGGCACCATCTTGGCAAAAAAGGCCCCATTCAGTTCTTAAGACAGCTATGTAAGGAACAATGGTTCCCATTTGACAGAGGACGAACTAGTTCCAGGTTAGAGGGACAGAGAAACCTGTTTATAATCTAGAAGGAGGCACGTCCAGAGTCCTTGCTCTTATCCTCGCACATGCTTCTCTCTGATAAGCAGGCAAAACACAGGGTTCCTGGCTTCCTTTCCCCATTCGGAAGCTGAACCTTGTTCACAATACTGTTTCTAATTGTGAACTTCAACCTGGAAGTTTGAAGGCTTCTTTTTTCTTGCCTTTGTTAACTCATGGTTGAGGAATGGCCAGCAAATGTCTGTTCACAGTTGATTTCCTGCATGCAGATATACAGAGGGTATGTGTTTTACTTTTTAGATATGTTTTTAGGAGTTTTAATTGTTAGGCATTCGTATGGATGTGTGCATACCACCTTCTTTAGGATTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAAGGACAACATTTAATTAGGGCTGGTTTACAAGTTCAGAGGTTCAGCCCATTATTATCAAGGAGGGAGCACGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTGCATCTTCATCTGAAGGCTGTAGGAGAAGACTGGCTCCCACATGGTTAGGAGGAGGGTTTCATTGCCTATCCCAACAGTACACACTTCCTCTAACAAGGCCACACCTCATAGTAATGCTCACTCCTTGGGCCAAGCATATTCAAACCACCACATTGCACTCCCTGGCCCCTCTAGGCTTGTTCAAACACAAGTCTATGGGGACCATACCTAGCCATACCATAATAAAAAAGTACATTTAGTCCAACTTCCAAAGTTCCCATAGTTTATAGCAGTTTCAACAGTGTTCAAAGTCCAAAGTTCAAAGTCTGTTCTGAGATTCATCCAATTACTTAACTGCAATCCCTGAGGCAAGACAGGAAACCAGCTGGGCAAACTCCAAACTCTGCATCTCCATGTCTGATGTCAAAGCGGTCTTCAGATCTCCAGCGCCTTTTTTATCTTTGTTGACTGCAACAAACTGGGCTGGTTCCACTCCTGTTAGCAGCTTTTCTCAGCAGATCTCACAGCTCAAACAACTTGGGGTCTCTAAGCCAACTTGAACTTCACAGCTTTCGTTCCAATGGCTAAAGTCCACACATGCTCTTCTGGGCTCCTCCAGAAGACTTGGGTCCCATCTCCAGCCCTGCCCTCTGTAGCTCTCTAGGCTCTGGCTGACTCCACTCCACTGCTGCTGCTGTTCTTGGTGATCATCCCATGCGCTGGCATCTCCAGTACACTGAGGTCTTCTGCTGCAGCTAGGCTTCACCAGTAGCCTCTCCTGAGCTCTCTTCATGGTGCCAAGGCTCAGCTCCTTTGCATGACCCCTTCAGTCCTAGACCATCAACTGCAACTGAGGCTGCACTTTCACCAATGGCCTTCCATGGCCTCTCACAGCACCAAGCCTCAGCTGCTCTGCACGACCCCTTCATGCCTTCAAAACCGGTACCACCTGGGTGACTCTTACACACTACCAAGTCTAACTGCAGCACAAGGTATAAGACTTAGGCTGTCTCTGGGACACAGCTTCCTTGTGCTCTCAGAAAACCCTTCCCAGGAGATTTCATATCAGTAATGCTGGTCTCTTTTTAACCACTGCTAATATCTTAGCTCCAGCTGACCAGCATCAGTTAATCCTAGTCATTCCTTCTGTTCTTGTCTTTAAAGCAGAGCCACATGGCCAAAGCTGCCGAGTTCTGCTGCTTGCAGCAAGGAGCTGAAACATGGCCCCCTTGGTCTGTTACATTATGACCAGCTTTCTGTTTTCCAGTTCCTTCACTGTCTAGCATGGCTGTCCTGGAACTTGCTCTGTAGATTGACCTTGAACCCAGAGATCTGCATGGCTCCTGAATGCTGGGATCAAAGGTGTGTCCCACCACACTTGGACTTGAAAAGCTTTTTCCTGTACTTGGTACTTGCTCAGATTTGAAACTGGCCTTGAACACTGAGATCTGTTCCTCTGTCTCCTGGGATTAAAGATGTGAGCCACTGTGCTTATTAGGCCTAAACCTAGCTGTCTGGGACCTCGCCCCAAAGTCATCACTGCTCCATTTCACTTCCTGGTGCCCCTCTTGCACCGTACATTTTATATTTTCCCCTTTCTTTACTTGTTCTTTTATTAAAACACTCTTCACAGGACTAAACCAGAGAACAAAGTCTGCTGGGCTTTTTTGAGACTTCCTTTGTCAGTGCAATTAATGTAAATCTCTTTACCTTAGACTCAGGCAGACTCTTCAGATAAGGGCAGAAAGCAGCCACATTCTTCAGCAAAATATCACAAAAACAGTCTCTAGGCCACATTCTGAAATTTTTATCCACTAAAACCTCTTGGGCCAGGTCTGTACAGTTGAAATCACTCTCAGTAACAAAGTCTTCTATATTCCTAATAGGATAGCCCACTAAGCCCCATTTAAAGCATTCCACTACTTTTCAAATTTAAAGTCCCAAAATCCACATTTTTACAACAAAAAGCATGGTAAGGCCTATCAGCAGTACCCCACTCTTGATACCAACTTCTGTCTTAGGGTTTTACCGTTGTGAACAGACACCATGACTGTTGCGGTAAAAATTAAAAAGGAACGTTTTCTATCAGTTCCCGTAAGCGGAATCTGCTTGCTCCAGCTGCTACTCTGCCACTCGGTCTGCAAGCTAAAAGGGCTGTCTCCCTTTTAACCGCCCTCTCCCGAGTCCCCAAGGCGGTAGTTACCACGCGCGCGCGCGCGCGCGTGTGTGCGCGCGAACACACACACACACACACACACACACACACACACCCTTGTTCTCTGGGCCTTGTGCATTCTCCCTCCACGAAGGCATCAGAACCAGATTTGCAGGCTCCAACTGCCTTCAGCCATTCTTTCACACACACTATCCTCTTTAGCCCAGTAAATCAAAATTCCAGAAACTTGTAATTTAGCAGTTAGATTTACATGTTAGATTCCCAATCCACAGTTCATCCACACAATAAATTCACTGCCAACTGATAAATATATAAACCTCACACCTAGACGAGATAAGATTGGTCTAGTTCACCTAAATCTGAGCCATCCTTCTCTGTTAGACTCATCTTGATCTCTCTCCTTCCTCCTCTCTCAGTTTCAACAACTTTGGCCCTGCCCCCACTCTCTACTGTCTAATGTTATCACCTTGACATCAACCTACACATCACCCTTTCTGATTTATTTTTTAAAAAAACAACTTTTCTCTCAAATGTAAGCTGTGTACATTTGAAAACATCTAAATGACTGTTTTCTCAATTTAATTAGCTTGTGTAGGCCAAATTAGTCTTCAAGTCTGTCAGAAATCTGAGAACGACTAATATTGCCTGAAAGTATGAGAAGCACAAAACATAGTTTCCAAATTTAACCAGTTTATAGAGACCACTGATCATCCGCAGCCCCTCATTCCTCAACCGGTGGAGCATTAGTCTTCGGCCTTCTGGCCCAGGATCATCTGACAGACTTTTGTAATGCAGGTTTCTGATAATTCTGGCTCAGCAAAGATTATCAGTTGACTACTCTGCATATCGTGACCCTTTTTTGGACAGCATTTGTAAATGAATTGAGGCAATTCTTGCCTAGTGGCTGTCTTGCCACAATTGGAGCAACTCCATTGATGCTCAGTTTCTTCTTAGAATCCAAGGAGTGCTGTCAGGACCAGACAGGTCTCTAGTCAGATGATCTTTAATAAAGAAATGTCCATACATGTCATATTCTGTGGACTTCTGATGCCTTTGAAGACCATCTATCTACACAAAGTGTTTCTGAACTCTTAGACCCTGACTGCTCTCAGCCATTTCTAATTGAACTATCTCAAAAACACCCTTTTAATTACTCAGAACCATGAGTTTGTTATCTGGCTCTTAACTTGAATTGCTAATCATCTAAAAACAGTTTATAATCGTAGTTATAGGACTGGGTTTAAGCCTTGTACTTGTAAACATTTTGTAACAAATAAGTTTCGTACCAAAGTAAAGATATGACTTTAGCTTAGTTATCAAATGAGATTATGGCTATACAAATCAATCTAGCTAATTCCTCCCTGTTAAATTATGACCATTTCTAAATTTCTCATAAAAACCACCTTGTAATAACCACCTTCAGCCTCCCAAAGTCTAGGAAATTGGGGTGACAACTCTTCAATGGCTTCTTCAAGCTGTACATGGGCGTTGAGATATCTTTGTGGTGTAGAGAAAATAGGGGAGTTGTTTGGCCTTAAGAAGGCCACCCAATGATTGTTGTGACCGCTGATGTCTGTCTTGACTGGACCCAGCTGAAGGTCCATGAGATGAGGAATCCAAGCAGGCCAGTTCATCATTCTGATGACGGGCTTCACCAGGCTGCACATTCTGCAATACATAAATCTCAAAACAAAATGTTAGCATCATCAAGATAATTTTTTGTTTGATTCTCTTTAATCCAGTTTTTCAGGTGGTCTCCCTCTACCAAATCTGATCCATGTGACTCTGGAAGGTGTCCAGAGCCTAATCACTCTTTTTAAAAAGACAAAGACAAAACCTTTCTCCCAAAATACCGTGTTCTTTAGTCTGTAACCAGAAAGGCTTGTATCTTGTACTCTCTCCCAGAGGAATAATATAGCAAGACTCAAAGTCACACCCATTTGAAAATTAAAACAATTTTTAAAAAAGAAATAAGCTAAAAAAAAGTGTATGAGCCTGATAGGCTTTTCTGTCATATCAGTCAATTAACCCTAAATTCCTGTGGAGCCCAGGTTAAGAGAGCCTGAGCTTCCTGTTGTGGTAAGTATAAAAAATAACCACAAACCCTCACTAGCTGGCATTGTTGAGCCATATGACCTTTAGCAGGGTAATTCATAAAACAAATTAAACACCTATCAATTCCAATACCAATAAGTAAGCAACTTATCAAACCAGGACTTGAGCCCATAATACATTGATCTGTTAAGCTCTCTACCTGGAATGTCAGATTTTTATTTATTAATAACTTCCATAATAAATGTCTTATTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAACCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAATGTCTTACTCACCCTGTCTGGTTTACAGACTTCTATTTTTAATAACCTTATTAACTTATAAGTATCACCACTCTCTACTTGGAGTAAGTGACGAATTTTCCCTATCTAAGTTCCAAATCATGGGTGAAAATCTCCACATGATTCAGATAAACTCTGTACTCTCTCCTTTTAACTATAAAAAATTTTAATCACTTTTCTTTTGATACCTGTTATTAAGAAGCAGGCAACTTGTCAAACCAGGATTTTAACCCAAAATTCCCGTGGAGCCCTGGTTAGAAAGCATATGAGTACCAGTGAGACGCGTTAGAGCACTGTGTCTTTAGACCATCTACCTGGGGAGCGCTCTACTTGGAGCCTCAGACTTTATTAATAACTCTATAAAATATGTCGTATTCACCCCGCCTGGTATTGCAGACTTTTTATTTTTAATAGCCTTATTAACTTGTAAATACCACCAGTCTCTACTTGGAGTCAGTGACGAATTTTCCCTATCTTAGTTCTGAACCACAGGTGAAATCCCCACGAGATTCGGGTAAACTCTGTACTCTCTTCTTCTAACTATAAAACAAACTTAATTACAATTCCATTAATACCTGTCAGTAAGAAGCAGGCAGCTCGACTAATGAGGATTTTAACCCAAATTCCTGTAGAGCCCACATACAGAGAATATGGGTATCTTGAAAGACTTAATAGAGCATTAATTCTTTCTACTATCTTTAAAACAATTAACCAAACATAAATTAAATCATTTTCCAAACAACCTTTGTTAAAGAAGCAAGCAGCTTCTAATCTCCAGCTCTCTGAGCTACCAGTCTAACCACAGCAGGGACCTACAGCCTGCAAGCCTAGGCTGCTCCCGTCTTTTGTTTAAGATTTCCAAACTTGAGACATCACATGACTCAACATGACACTGGCCCCCTCTTACTAGAAAATAGAACTTTCTCTTTAACTCTTTGGCTGATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTATTATAAGTACACCGTAGCTGTCTTCAGACACATCAGAAGAGGGCATCAGATCTCATTATAGATGGTTATGTGCCACCATGTGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGCGCTCTTAATCACTGAGCCATCTCTCCAGCCTTAGGCTGATAGTCTTAATTTTCTAGTAGATTCTTTCCCAACACGTTGGTTTGCCACCTGTTACAGTAAAAAAAAAAAGGAACATTTTCTATCAGTTCCCAAGAGCTGGATCAAGGCAACTCTTAATAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATATCAAGGCGGGAGCATGGCAGTGTTCAGGCAGGCATGGTACAGGAGGAGCTGAGAGTTCTACAGCTTCATCTGAAGGCTGCTAGGAGATGATTAGCTCCCACGAGGTTAGGAGGAGGGTCTCATTGCCTACCCCCACCTTGACACACGTCCTTCTACAAGATCACACCTCCTAATAGTGCCACTCCCGAGCCAAGCATATTCAAACCACCACACCTCCTTTGTTCCTTCCAGAGGCTCCAGCTCCTGATCGGTTAGGTGAGCTAGGTTGGCTGGTTGGCTTATTTGAGGCAGGGTCTCACCGTGTAGTGTTAACTGGTCTTAAGCCCATAGAGATCTGCCTTCCTCTGCCTCAGAAATTAAAGAGGAAATTAGACTGAGATCATTTGCTTTGTCTATTTGGTTTCTGTTCTGTCATTGCTTACTTGTATCACTTGGGATGAGTAGGTAAGAAAATAAACTGCTACAATAATGATAATAATTTTAGTAAACTTTCATGATTCTCGGGAAAGATTATAAAGTATTTTTTCAAGGTTTGAATTTGCGAAATTCACTGAAATTCATGTCTAAGCTCAAAGAGCTCAAATTCAGAGTTATTACTAATCTTTGTAGAACATAGAGTGAGCAGGACAGAGATTGAGTCCTAGAAAAACCAAAGTAAAAACAGGCTACAGTTGCTAATACTGATGGGAGGTGTCAGGCATGCCAACCCTTTGCTTTGAAACACTAAGAGTGGCTTCGTCTCCACTTGTAGGGCACTGTTCTGATGAGCTAGTGATCTCTACAGTATACAGTTCAGCAACTTGTCTTCTGCTTTGAGCCATGTAGTTCATAGATACATTCTGCTCCCTAGCCAGACCTATGAGAAGGCTTCACAGGACAGTCAAGCACAGCCCTCACCTGCCTTCTTGATTGGAGACAGATAGTTAGCTTGGCTCTGCGGCCTTCTTACCTGCGCTGACCGTGAGCATTACAGTGACGTATGTACACGAGAGACGCAGCACTGTGCTCTCTGTCCTTACAG
Seq C2 exon
ATACAGCAGAGGGTGTTTCTCAGGAGCTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136:ENSRNOT00000018056:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(68.0=89.5)
A:
NA
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]