GgaINT0091657 @ galGal3
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4840015-4841149:+
Coord C1 exon
chr2:4840015-4840067
Coord A exon
chr2:4840068-4841080
Coord C2 exon
chr2:4841081-4841149
Length
1013 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTTGTGTTTCTCCCCAACAGATA
3' ss Score
11.35
Exon sequences
Seq C1 exon
GAATTCAAAAAAAGAACTCAATGATATCAGATTTGAATTTACGCCCGGGAGAG
Seq A exon
GTGAGCTGGTGTGACATTCTGGTGCGTGAGGGTGGTTTGGTTAAAGGGACCTTTTGTGTTTAGTATTGTTCAGTTGTGTGTATGGAGATGCCCTGAGAGTGTCTGCCTTTAGTGCCTTCCTAAAGGTATTCCAAGGCTTGACTTATGATTGAGCTTTTAGCACAATTGAGCACTGCAGCTAAGAGGCCTCTCATTTAAAACTGCTACAAATGCAATTGAGTTGCAACCATTCAACGCAGTTTAGCTTGGAGTCAGGAAGCATAGCTCAGAACTGTCATACTGCAGCGCTGTAAGCAGTAGGCTGGTTGATGTATAGAAGTGTGTGGTTTTCCCCTTTCCCTTCTGTGGCTTTTGATCCCATATTGAAAATGAATAGCTAGAAGAATTGACTTGAGAACATAGCAATGCAGATACTATACTAGTTTGCTGGGCTTTCCCCTTCCACGTGAAAGATATAGCTCCCTACCAAGTCAGTGCACTGACACGACACTCTTTTATTGTGGAGCAGACATGCAAGCCTAGAACTTGCTCATGTATATGTCTGGCTTGCAGCAGGTTGTCATTTAGGCTGCCTCACTACACACTGAAAGACACCTCTTCAGTAGGGTGTACTTAAGGTATGCCCTGAATTGGGTGAGTGCACTTATTTCTATACCAATTTAGAAGGGAACATCTCAGGTCTTTGAGAAGGCCAAGGACTCTGCAAAATTTAGAGTAGCCTCAGGATTTGCCCTGACAAGGGTAGGGGAAAAGAAGCAAGCCTGGAACGGCACAGTCATTCCAGCTCAGAAAACAGAGCTTTTCCAGCTCAGTACAGACAGCCCTTTCTGGTCAGCATTAGAAAAATTAAACTTGAAGGTCAGCAGCTGGCATACACTGTCTCATGTAAACAGTATTTTTGCTCTGTTTTTTTTTTTTTTTTTTGTACAAGCTTCTAGATTTCTGTGTGATACCTGTGTCAGCAGGACAATTTCTTTCGTATGGTAACCAGTTCTTGTGTTTCTCCCCAACAG
Seq C2 exon
ATACTGCTGATGGCGTGTCTCAAGAACTAATTTCAGCAGGGCTTGTTGATGGCAGAGATCTGGTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
NA
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]