HsaINT0119196 @ hg19
Intron Retention
Gene
ENSG00000172939 | OXSR1
Description
oxidative-stress responsive 1 [Source:HGNC Symbol;Acc:8508]
Coordinates
chr3:38291457-38292962:+
Coord C1 exon
chr3:38291457-38291509
Coord A exon
chr3:38291510-38292893
Coord C2 exon
chr3:38292894-38292962
Length
1384 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCTTCTTTGTCCTTGCAGATA
3' ss Score
13.4
Exon sequences
Seq C1 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
GTGAGGCATCAAATGGATTGAAAACAAAATAGCTTCCAATTTGTGATTCAATGAAATGTGTTGTGAAGTTTCTGTCCTTTGTGAAGTTTTGCTTTTAAAGGATAATAAAAATTTTCCTGGTTTTGGCGAGTATATGAGTGAGATAAAAATGCAGTTCGTTGACTACTAAACACATTTAGAAAACCTTGTATAATAATACAAACAGTAATAAATATATGATAGCTCTTTACAGCTTACTATAGGCCAGGCATTGTCTTAAGCGTTATCTTATTAAATTCTCACAGCAGTCTACTAAGGAAAAATTATTATCCCCATAGTATCGATGATGAAATCAAGACTTAAAGGCAAAGTAACTTGTTCAAGGTCACACAGCTGGAAAGAGGTATAGCTGGAATTCAAACCAGATCTGTCAGAATCCAAAGTTCATTCTTTATACATGGTTGTTCTCCATGATGGTAAAGAAACAAGGTCTGCAGTCTCCTCTCTCCTCAGACAGAAGCTGAGGTCTGTCATGTACTGTTTCTGGCTGTTGAACTTCACCTTGAACAAGGTGTGTTTTGTTTCTTGCCTTTATTACTCAGTGTTCTAATTTGGGGAGTAGCCAGCAAGTATCTGTTCTGTGTATCATGCTTATTCTTCTTGCTGTCTCACTATCATGAGCAACTAACCACTAAAGAGAAAAGATGCAGGTGTACAGAGGTGTCACCTGTTTTACTTTTTAAACACCAGGCAACATCACATTTTCAGGAATTAATTCAAATTGCTGGTTGCCTGTGTGAATGTGTGGACACTGTCTCCACCGCAGTCCTCCTGTTCCCTCTGAGGGGCTCATTTTCAAGCCCTTGGCAACCAATACCACTGAGTTGGTTGAAGATGAGGTTAATTGGGGATATTCTGTCCTCATCTTTTTAGTTTCTGGTTATACCCATTGCTCAGATTGTACCACCTGGAATAACTAGATAAGAAGAAAAGCCCACCAGAATAAAAAAGTAAATGATTTTAGCAAAAAACTTGGAGTATGATTCCCAAAGAGAAGAGACAAAAATTTTTTGAGACAAAAATTGTTGCCTTAGTTTTTGAGAATAAATCATTCTGGTTTTTTAGCCCTAGAGATGTTCAGTATTCAACATCATGTCTCAGATATTTGCTACCTGGTTTATACAGATTCTGCCCTCTAGCTAGATCTGTGAGAATTCCACTTGAGATAATCTCAGTGGTAGGAAAAGTCTTTGTATGGAAGGAAGGCCCTGCCTGCCTTCTTGGTTCTGTGGATTTAGCATCCAGCTTGGGCCTAGCATGGCACACTGACACCCACATGAGCTGTGAGAGTTAACAGTGGCAAGCACGCACAAAAAACAGAGCACTGTCTTCTTTGTCCTTGCAG
Seq C2 exon
ATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-OXSR1:NM_005109:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(73.3=75.9)
A:
NA
C2:
PF122023=OSR1_C=PD(18.8=25.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)