BtaINT0106598 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11731134-11734445:+
Coord C1 exon
chr22:11731134-11731235
Coord A exon
chr22:11731236-11734311
Coord C2 exon
chr22:11734312-11734445
Length
3076 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TATGTTGAAAATTCTCACAGGTT
3' ss Score
5.81
Exon sequences
Seq C1 exon
GTTCGTGGTTATGATTTTAAAGCTGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACGGGGGCAGCTCCTTACCATAAGTACCCACCGATGAAG
Seq A exon
GTGAGGCTGCTATCCATAATACCCTGCCAGCTCATGTCTCAGTTCTCTGTCAGAGGCTCACCTCATGTGACATTCTTTTTTAAGAATTATGTAGATTTATTAGTATATGAACAAGTATTTTTATATTAAAACACTATGTGAATGTAAGAGTTTATAAAAATAGTAATTGTCCTCATTTACAGTAACTCAGCCATTCATATTAGCATTTTATCCTCCATTTGCATGTAAATAACACACATAGCTGGAGCTCTTGTGTTTGTGGGATCATTTGACATTCTTATCCATTGTATTCTGCCCTGCATTCCTTCTAACTTCTTTAGCAGTTAGAATCTCTTTTAGATATTTGGTATGTAATACTGGGTAGCTTTACATTGTAACTGACCTTACTTGATGACCCACCATCTCCTGACTGTGTAACTAGTTTGATGTTTGGATCTAATCTGTCTCATTTTAGTATGTGTTCCCCACAGACACCTGTGTAGAGCAGCCTCAGTGGGGATGATGATCATGTCTACCTCTTAAGGTTGTTGGAAGAGTTCCATGTAAATAGTAATTATTGCTAACATTCATTGAGCACTCATCTGTGTCACCCACTGTTTTTAAGTGCTTCTTATATGTTAGATCCATGCAAATTGTTCATGTGCCATACATATGTATTATTTTCTTTGTTATTGAATAGAAGTTTGCTTTGTGGTAAGACATTAAACATCTTTTATTTAAAGGCCTGTTACATCCTGAAGTGTGTGTGTGTGTGCTTAGTTGCTCAGTCGTGTCCGACTCTTTATGATGCCATGGACTGTAGCACACCAGGTTCCTCTGTAGGGTTATCCAGGCATGAATACTGGAGCAGGTTGCCGTTTCCTACTCCAGGGGATCTTTCTGACCCGGGGATTGAACCTGTGTCTCTCGCGTCTCCTACATTGGCAGGCAGGTTCTTTACCAGTAGCGCCACCTGGGAAGCCCCCATCCTGAGGGAGTAGTTACCTAAAATGTAGTTGTTAATCCTAATGTCCCCAACATTAGTAATAAATGAGTTTTTTGTGTTTCAAGATGGTCCTGCCAATACTATTGGCAACCATTTTCATCTGTGTGACCCCTAAGTGAGAATATGCACATGAATTCTATTTGTCTATTTGTAGCTCTAGCCATTGTTTATAGGTTTGCTTGCCCGCTTTACAAAATGCCTTAAAATGCTGAGCACCATTGTGAATTTTTGTCATAGTGATATTCATGTATCTATGTTCTTGGAGCACTTTAGAACCTTTAAAATGTTACTCTGTCCCCTTTAAGGCACTAAAAACGTAGAGAGAGACAAAATCAGTAAGAATAGTATGAAAAACCTCTCTGTATGTCCATATTCAAAACGTGTGTATATGTTTTTTAACCTTTATGTTTGATGGTTGAAAGGTTAGTGGTACTCTAAGGCCTTATTTTCTTTCTTTAATTAAATTTATTTATTTTAATTAGAGGCTAATTACTTTACAATATTGTATTGGTTTTGTCGTACATCAACATGAATCTGCCACGGGTGTACACGTGTTCCCAATCCTGAACCCCCCTCCCACCTCCCTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCAGCCCCAAGCTTCCTGTATCCTGCATCGAACCTGGACTGGCGATTTGTTTCTTATATGATATTATACATGTTTTAATGCCATTCTCCCAAATCATGCCCCACTCCCTCTCCCACAGAGTCCAAAAGACTGTTCTATACATCTATGTCTCTTTTGCTGTCTCCCATAAAGGGTTTTCATTACCATCTTTCTAAATTCCATATATATGCATTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAATCGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATATTCCATTGTGTATATGTACCACAGCTTTCTTATCCATTCATCTACTGATGGACATCTAGGTTGCTTCCATGTCCTGGCTATTATAAACAGTGCAAGGCCTTGGTTTTTTCCTAAAGGTCAAGATTGATAGATGTAAATGAATATTCACAAGGTTTTGAAAAGGATTGCTCTTTATAACTGTTAAAAAGTGGGAGGTTATTTTGAGGCACAAGAAATGGCTTATTCTTGAAAGGAGGTCAGGGAGAAAGATGAGGTTTGCTTTATATTATTGTAGGCAGTGACTCCTGAAATTGTAGCCAGACATACACATGTTAATAACCTATTTGCTCAAAATGAGAAATACTTGCAACCTTAGTAATCCCCTTTTAGTAAATATAAATTAAATCTGAATAGCAAATAATAAATTGACTTTGATTTTGGTTTTGACTTTGTGCTTAGAAAAATGGGTTATGCTTTTATTGAAAAGTCAAACAGTATAGAAAATCACCCCAATTGCATCATATTAATAGGATATGATTACTTCATATCCTATTCATATCCTTCATATCCTTTGTTACTTATGTCTCTATGCATCAAGATAGTGTGTTGCCATGTAAGTCAAAGAAGAAAGCGATTCAGGATGGACAGTTGCTGCAGGGAAGGTAGGAAGAGTGCAAACTAAAATGGTTATAGCTTTGTTAACTAGGATATCATCAGTGATTTCTGTGATCGAAGTTTTTGAGGCATTCTTGGAAGAGAAGGCCAGGTTACAAGGGGTCAAGTTGAAACAGAGCTATGAATAGGTAAAGTTAGCAAGGTCACAATTGTGCCGTGGTTTTTTTGTGCTTTTTTTTTTTTAAGTTTGCTGGTGTAAGAATTGGATGGAAGACAGGAAGGAAAGATTTCAACTAAAGGACATATAATACAGTGCTGATACAGTTGAGCCTTTGCAGGCACATTGCCCGGGAAGCCAGCTGTCTATAGGATATTATTTATCTGGAAAACACCTAAATAGCTCTAGTTTCCAAACAACTGATCTAGATGTGAACTTTCAGATAATAAAATCTGCTCAGATGTTTGGAGGTTGTCTATATTGAAAAATTGAGGCCACAATATTTGATTACTGAATCTTCAGAAGTTTACAATATGTTGAAAATTCTCACAG
Seq C2 exon
GTTTTAATGCTGACACTGCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]