GgaINT0091649 @ galGal3
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4823763-4826894:+
Coord C1 exon
chr2:4823763-4823864
Coord A exon
chr2:4823865-4826760
Coord C2 exon
chr2:4826761-4826894
Length
2896 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATAGACATAATTCTTCCAGGTT
3' ss Score
3.99
Exon sequences
Seq C1 exon
GTCAGAGGATACGATTTCAAGGCAGACATCTGGAGCTTTGGGATCACTGCTATCGAACTGGCTACAGGGGCAGCTCCTTATCATAAATACCCCCCGATGAAG
Seq A exon
GTGAGCAGGTCTCCAGATACTTGTGCTAGACAAAGGGTCTGAATGTTCTATGAGCGTTCCAAAGAATTTGGCCAGACTGTTCTGTTGAAGAGCTTGTCCTCTCTATTTGCATTTGTGGATCATGATGTTCTTAGGCTTGTTTGAAGTCAGCTTTTAAAAATATGCCGCTTACTCAGCGTTGTCCAAAGCTGTGCACAGTTCTCATTTAGATCTGAGACTCTCCTGGGTTGCCATTCCTGAATAAAGTGCTGTGTGGCTCAATCCTGGGGCCTCTGTAGACAGCAGATGTTAAAGCTGTAAACAGTGACTCAGAAAACGTTAGGTGGCATCCACTGTCACTGAGATGGGGTACTAATTCCTTTTGTACTGATGGTCCTCCTTGAAACCTCTCAGAAACACGTTACCAGTGTTCCCCAAGCAACTTCTGTCGTTTAACATGAAAACAACCCTGTTAATTACTGGGTGGTGTCAGAAATTTCTGGAAAGTACCACATCATTATGAAGTGGAAAGGGATTGGCAACATCAGTGTTTCATTGAAGTTGAAATGGAGGAAACTGTCTTGCTTCAACACTGCCACTTCAAAAATCTCTTTGAACATCTTGAATTTAGTTTGGGTGACTTTCACCAGTTTCCTGTTTCTTGAATTAGGAGCTGCTTTTCACATGTGCCTCTTTCAAGGAATTTGTATTGTAAGGCTACCGGAGTTGACCCCATTAGTTGAGGTTTGGAGCACCTTGCCCTTTGTCTGAGCTTTGAGATCTTCCTTAGCCCCTCTGAAACCTGATGGGACTTTGTCTTGATCGCAAAACTTTCATCCCCATCTGCATTTTACAGAATCACTCAGAATCGTATGAGTTGGAAGGGACCTCTGGAGATCATCCAGTCCAACCCCAGTGCTAAAGCAGTTTCCCTGGAGTAGGTTACAGATCCCATCCTCTTGAAGGCTGCTTTGTTTCTACCCTTGGTATGCATACTTGCTCAAATTTAACAGGAGAGGGTGGAGAGCCCTTTTAGTAGCCCTGTAGTTTCTGGTTGGACTGGTTACCAGAGATAGGAGGCCTGTGGGTGCTAAGTCCCCCAGTTTTAGGCATATCATATATGAAGTTTTCTTTTTTTTTAGTCCTTGGGTTGATGGAGTGCTGTGCAAGGTGAGCATCATCTCTTGCACCTCAAAAATGCTGTCATAATTTGGGAGTCCAGTAGCTCCTGATTCATTAGGGCAGGGACAGACATGTGCTGCTTGAAATGCCATTCAGGACTTCACGCTGGTGTTTAATTCCTGTTGAACAGCATTAATTTCAAGATTTGCATCAGTTCTGTGCAGAGGCTGTAAGAATGGCTGAGTGGTTTAGAAGTACCATTCAAGTTCATACCGTATCAGTGATTGTGGCAGTGCAGTGAGGAGTTGAGGGAAATGTTATGCTGCTTTAGCTGTAGCTGTTTTCGTTGATACTTTGTACTCTTATATTTAGTAGTGTTTTGCAGTAGCTTCTGCAAAACTTCTTTTTATTGTTTTCAGTGCATACACCTGAATAGATCACCTATTTAGTATCATGTTGTCATGTAGTAGGTAGTTGTTAATCTGCAGTTATATTGGGTATGAGTTCCAGTCATGCTGCCTGCAAGAGGATTTCTGTTTCATATATGGAATGTAGTTGTATTCCACTGCAGATTAATTTTCTTGCACAGCAAAATGGCCCGTGCATTAAGTGACTCTCCAAGGAAAGGGGAAAAAGCAGGGAGTTCTTTGTAGACTGTATAATTTCAGCTAGATTGATGGGCTTTCTCTGCCCTAAGCGATGTAGCTTTGAAAGCTTTTTAAGCGTGCTGTTTGCTGCTTCCTTGTCTAAAAATAGAAATTCATCTGGATGTAGGTGACAAGTGGAAATGGAAATTAGTCATTTTCTTCCTTTCCTTGAGAAAATATGAGTGATGTGAAGGAGATAATCAGTTTGGCTTGATGGGTACATGTGTGAGAAATGCCTTCACCTGTCACTGCAGTGGTACGTGGAAGGGAGCACTCCCTGTGTTTTATATTGCCCTACTGCTTTTATAAAAACATTACAGGATTTTATGCAAATCTCCTTTCTGAATACAGGATACCTGCAGGGGAATCTGAACAGTCTTTGAATGAGGTTTTCACGAAGCACGTAGGTGTGGCACTTCAGGACATGGTGGTGATGAGTTGACAGTTGGACTTCATGATCTTAGAGGTCTTTTCTGACCACAGTGATTCTGTGAATCCAATGTCTTGCGTAGCTACTCATCTGAAATGGGGAAGGCTGTTAAGAGGAGGGACATTGGAACGAGATGATCTTAGAGGTCCCTTCCAACCCAGGCCATCTATGATTCTAAGTTCTGCTTATGCGTTTCATCACACCAAACTCGTCTGGATGCTCACCTTGTGCTTGGTCTGCAGACTGCACTGTGGGCCAGAAGAAGCAGTAGAAGACAGTAGCATGGGCTGTTGGTCATAAATCAGACTAACTTCCTGAGAAATGAAGAGATGGAAACGCTCCCTGGGTACTGATGGATGACTTGTGAAACTCTCAGCTGACAGTCAGAATTTGCAGAGGTTTAAAGCTTTGGAAGTGAACTGTTAACTCAATGGCTGTAGGAAGCAGGGAGAAGAGGAGAAACCCTGTAGTTGCCTTGAGGAAAAGGTAGTGAGGTGGGTTCTCGTTGTCAGGTGAATAGGAGGACACTGCTGAAACTGTTAAGAAGAAAAGAATTGGTCTGAGTTCAGTCTTCCCTCCTGAGAGCCACTGTAAGGATCAGTCCTTGTTAACTCAGATACTTGATAAAAACACTTGTTTAAAATGCTGTGATGCAAAGCTGTGTCCTCTATATAGAAGCCAAGAAAAAACTCATTGCCAATAGACATAATTCTTCCAG
Seq C2 exon
GTTTTAATGCTGACACTACAAAATGATCCCCCGTCTTTGGAAACCGGTGTGCAAGATAAGGAGATGCTGAAGAAGTATGGGAAGTCTTTTAGGAAGATGATTTCATCGTGCCTACAAAAAGACCCTGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.311
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]