HsaINT0119204 @ hg19
Intron Retention
Gene
ENSG00000172939 | OXSR1
Description
oxidative-stress responsive 1 [Source:HGNC Symbol;Acc:8508]
Coordinates
chr3:38265303-38266195:+
Coord C1 exon
chr3:38265303-38265404
Coord A exon
chr3:38265405-38266061
Coord C2 exon
chr3:38266062-38266195
Length
657 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TATATTGAAAATTCTTGCAGGTT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GTCCGTGGTTATGATTTCAAAGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGCTCCTTATCATAAATATCCACCAATGAAG
Seq A exon
GTGAGGCTTGTATTCCAAATACTACCCCAGCTCAAGTCCCAATTCCTTTTCAGAGCCATTTGCCAGTCTTTTAATTTTTTTTTTATTGTGGTAAAATACACATAACATAAAATTGACCATCATCTTTAACCATTTTGAATATATAGTTCAATGGTATTAAATGCGTTCATCACGTTGTGCAGTTGTCACCACCATCTGTATCCAAACTCTTCATTTTAAAACTGGAACTCTATACCCATTAAATAGTAACTCTTGATTCCCATTCTTAGCCCCTTGGCAATCACTTTTTGTCTCTATGATTTTGACTACTCTCAATACCTCATATAAGTAGAATCACACAGTGTTTATCTTTGCATGGCTAGCGTAATGTCCCCAAGTTTCATCCATGTTGTAGCATGTTGAAGAATTTTCTTGCTTTTTAAGGCTGAATAATATCCATTGCGTGTGTGTGTTGAGAAGCTAACCATCTACAGCAGATTATTTACGTGAAATACACGTAATAACTCTGGGTTTTAAACAACTGATTCAGATATGAACTTACAGAAAATAAAATGTTTGTATGTTGGTCGGGGGGTGCCTGTATTGAAAAATCTTGACCACAATAGTTAAACTTTACTGAGTCATCACAAGTTTATAGTATATTGAAAATTCTTGCAG
Seq C2 exon
GTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-OXSR1:NM_005109:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGTGGTTATGATTTCAAAGCTG
R:
TCTGGATCTTTTTGAAGGCACA
Band lengths:
230-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)