MmuINT0114258 @ mm10
Intron Retention
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119264750-119267244:-
Coord C1 exon
chr9:119267143-119267244
Coord A exon
chr9:119264884-119267142
Coord C2 exon
chr9:119264750-119264883
Length
2259 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCAAACTTCTTACTACACAGGTT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTTCGAGGTTATGATTTTAAAGCTGATATTTGGAGTTTTGGAATCACTGCGATTGAACTGGCCACAGGGGCAGCTCCTTATCATAAATATCCACCAATGAAG
Seq A exon
GTGAGGCTCATATTCAAATATTATTCCAGCTCAAGTCCCAGTGACTTTTCAGAACCTTTGACGTTTGCCAACCGTATCTATGGTTATTTATTTTCCTTGTATTTATGTGTATTATAGCAAAATATAATCTTTCTAATAAAATTACCAACGTAACCATTTCTACTTTGTATTATATAGGGACCAAAACCAGGATAAACCATTTTTGATTGTGTATTTAAGTAATAAGTATGTTCATGACGTATAGCCATCACTGTACCCAGACTCTTCTTGGATTCAGAGCCATTGAAGTCTTTTATTTAGTTCTTAACAGAGTGTGTACAGAATTGCTGACCTTCAGTGGCCTTGCTGTTCTGTGAGACAGAGCTGTGGAGTTGAACTGCATTGGTGTCTATTATCCGACCTCCTTGCCTCTCTACTCATCGGCCCTTCATAGGCTCTGCTGACAGAGTAACTAAGGTTGCAGGGGAGGCAGGAAGAATGTGAACTAAGAACCTGAACCAGACGTAGGTTTGTGACAGTTGGTGATTTCTGTAATAGAAATTTCTGGAAGAGAAGTCTCCATACTATGAGAAGTCAAGGAAGAAGAGAGCAAGCAGTAGGTGAAGCTAAGGAGGCCATGCTGTCTTCTGCTGTTTTCACATTTCTAATTTTACAGTAGTTTGGGAATGGAAGAGCTAAGTCTGTGGACATGAAGAGATGAGCGGTTGTAACTGAAGGATGTAATAGCAGTTGACAGTGGGCGCTTGTGGGGATCCACTATCTATATATAGCTTTTAACTAGTGTCCAGTATACGTGGGACTCACAACACCCAGCTGGGCGTGGTGGCGCACACCTTTGATCCCAGCACTTGGAGACCCAGCACTTGGCAGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAATACTGTTCTCTGTGCTGTCCAAAATGTGAAGACTTGTGAAATGAGTCACTAGTCCTGGCACATCAGTGAAGACTTGTGAAATGAGTCACTAGTCCTGGCACATCAGTGAAGACTTGTGAAATGAGTCACTAGTCCTGGCACATCAGTGAAGACTTGTGAAATGAGTCACTAGTCCTGGCACATCAGTGAAGACTTGTGAAATGAGTCACTAGACCTGGCACATCAGTGAAGACTTGTGAAATGAGTCACTAGACCTGGCACATCAGTGAAGACTTGTGAAATGAGTCACTAGTCCTGGCACATCCTGTAATGAGTTCCTCAGGCTGTGTTTCTCTGCTTTGAGTTTTCTGAAAAAAGCTGACCTTTTTAGTACAATAAACGGGGCTAATTGAAGGGAAAAAAAAATTGTGGTGCTGGGTGTTGAGCCCAGGGCCTCACAAATGCTAGAAAAGAACACATATCCCCCAAGCTATAACCCTGACCCTAAAGCCCCACATATGCCTGTGTACCCCTGTGTGCCTGTGTGTGTGTTTATACCCATGTATGTGTGAGCTTTTAGAGGGCAGAGGTTGTTGTCAGCTATGTTCCTCAATTACCCTTTGCCTTCTATTTTGAGACAGGGTTTCTTCCTGAAACCTGGAGCTTGCCAGTTTGGCTGGACTGGTTGGGCAACAAGCCCCACTTCTCCTTCCCAGCTGGGATTACAGATGTAGACCACCACACCCAGCTTTTTTTAATGTGAGTTCTGAAGGATTGAACTCAGGTCCTTATACTTAAATAGCTCATATGTCTATACTGTACTGAAAATTTTACAGGTTTATTGGTATACTTTTGTGGGCTACTTTTTTGGATTCCCATATCTACCTCTCTCCCAACCCCCAACACTAGGTAGGAGAGAAAGAAGGTTAGAGGGGAAAGGGGGCATAGACCTCTTTAGACTACTTTCTTCGGCTTAGGGGCATCATGTTCCTTGGAGCAAGTCCAGTCTTTGTCACTAAGACATCCAATTTCTTCTCTTCTCTTTGCTCAAGACCACTTGACAAACTGCAACAACAGAAAGCAGCAGCAGCATGGAGAGCAGCAGCCTCCTCAGGCTCTCTGGGAGTCTCCCATTTACACCCTCTCAAGAGTACCCAGAATTCCAATCATAAACTATCTGCAGCTGGCAAAAATCACATCCCTGCTAGAGTACGAGACAAACCATAGTTAGCTTCTGTAGACAATCTGAAGCCCCCTGTATCCCACACCTGGAATTAAAATAAAAACATAGTCACATAACATCACTGGGTTTTTAAAGAAACCAAACTTCTTACTACACAG
Seq C2 exon
GTTTTAATGCTGACGCTCCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAGAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737:ENSMUST00000040853:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types