HsaINT0119204 @ hg38
Intron Retention
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38223812-38224704:+
Coord C1 exon
chr3:38223812-38223913
Coord A exon
chr3:38223914-38224570
Coord C2 exon
chr3:38224571-38224704
Length
657 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TATATTGAAAATTCTTGCAGGTT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GTCCGTGGTTATGATTTCAAAGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGCTCCTTATCATAAATATCCACCAATGAAG
Seq A exon
GTGAGGCTTGTATTCCAAATACTACCCCAGCTCAAGTCCCAATTCCTTTTCAGAGCCATTTGCCAGTCTTTTAATTTTTTTTTTATTGTGGTAAAATACACATAACATAAAATTGACCATCATCTTTAACCATTTTGAATATATAGTTCAATGGTATTAAATGCGTTCATCACGTTGTGCAGTTGTCACCACCATCTGTATCCAAACTCTTCATTTTAAAACTGGAACTCTATACCCATTAAATAGTAACTCTTGATTCCCATTCTTAGCCCCTTGGCAATCACTTTTTGTCTCTATGATTTTGACTACTCTCAATACCTCATATAAGTAGAATCACACAGTGTTTATCTTTGCATGGCTAGCGTAATGTCCCCAAGTTTCATCCATGTTGTAGCATGTTGAAGAATTTTCTTGCTTTTTAAGGCTGAATAATATCCATTGCGTGTGTGTGTTGAGAAGCTAACCATCTACAGCAGATTATTTACGTGAAATACACGTAATAACTCTGGGTTTTAAACAACTGATTCAGATATGAACTTACAGAAAATAAAATGTTTGTATGTTGGTCGGGGGGTGCCTGTATTGAAAAATCTTGACCACAATAGTTAAACTTTACTGAGTCATCACAAGTTTATAGTATATTGAAAATTCTTGCAG
Seq C2 exon
GTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939:ENST00000311806:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGTGGTTATGATTTCAAAGCTG
R:
TCTGGATCTTTTTGAAGGCACA
Band lengths:
230-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development