BtaINT0106599 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11734312-11737680:+
Coord C1 exon
chr22:11734312-11734445
Coord A exon
chr22:11734446-11737631
Coord C2 exon
chr22:11737632-11737680
Length
3186 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ACTTTCTTTTCTGGTTTTAGACC
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTTTTAATGCTGACACTGCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAG
Seq A exon
GTAAAATATGAGATAAAACTTATCCTCTTCATCTAATATATAAACCATTGCAGAAGGCTAAGAATCACATGCATACATACGTGTGCAGAGAATTCAAAAGAACTAAACTTAAACATTAAAAAAATATACACTGACCATTATACTAAATTGAAAATAGTGAATTATATACTTTCTCCCTTCTTTTTAGTATACAGTGCACCCTAAATAGTTAAGATATTTCTTGGTTAATTTCTTAGAGTTATAAATGTATTTGTTAATGAGCTGCCAAGTTAGTGGGAGGGCTTATTTTTAATTTGCATATAAGAGTTATAAATAAACCAGTATCTTAATGTTCTTTATGATTTTATTAACAGGAGAAATAGCAAATACTATATTTAATGTCAAATAGTCATACTTTCTTCCTTATTGGAAAGGTATTTTAGTTAAGTAGACCAAAATATCAAAGAGCTTATTATTAACACTAGAAAGATTGAATGGCAGGTGAGTTAAAGAAACATGATCATCTAATGTCTGTATCTATGAATTAAACAAGCATAGAAGTTAAAGATTATTGCACATAATCTTTTATCTTTGACATCAGTCAGAACTCCTGATTTCTAATCTTGGGCCCTGTTCTCACTCTGTCATATTTTTCTGTTTCACATGGTATATAGACCACTCGGCTTCGTAGCACTAAAAGATTTTTTTGATTTTTCTAAAGCTCAACAAAACTAAAAGGTTTGAATTGACTTCCTTGATCATGTTTTCAGTATATTTAATGGGCTTCAAAATTTACTGTTGCAAATATTGGAAAGGGTAAGAAAAATAGGCAGGAAAGTTCAAACCTGTCATTTTAGAACTTTTTTCCCTCTTTCTTAATACATTGTTATTAAAACATAGGGAACAGTTTTGCTTCTCCCAAATTAGTTGACTGAAATAACAGAGTTCTGTTACAAACACTTAGACATTCTGGACAAATCTGTCAAACTTAAAATCATAAGAATAGAGATGAACTTGTAATAAAGGGAGGTCTTCAGATGCCAGAATTAACAAGGAAGCCATAAATCCAAGAATTATAAACTCATCCTGTGCTGCCTTCAGTGTGACACTGTTCAGTCTAGTAACCTACTGGTTTGGAGTTTTAACTTCCAAGTGGGCTAAAAATGAGATACAGGGCCCACCCATATGGGTATTTTGAACTGAGATTTCTGCTTAAAGCTAGAACATTGATAAGTATGCATCCTGTGTGAAAGGATAGATCAGAGAACAACAACAACAACAAAAATCTGTCATCACACAAACACAACAGAAATCTTTCCTGAATAATCAAGCCCTCTGACTTCAACACTCCACAGGTTTACAGTCTGAATTTATACCCATATTATCCAGGAACCCACAGGATTAGAAAGTAAAACAGTTATTACTAAGCCAGTTTTGTTTCTGGCAGAAGCAATCAGAAACTGCACTGTTAGACTACTTCCAACACCCAGGTCGCTGCAATTCTTGCACTGAAGGGATCACAATCCAGAATTATAAACACACAGTGAAACCCCACACTGTGACCTGGAAGCAACATTCGAAGGAATAATGGCCAAGAATGTTCTGAATTGATGAGATATCTGTATTTTCAGGCTAAGGAATTATTGTCCTTGATTCCACGCAGTACCCCTCTTTTTCCACTTGTATACATTGTCATGAAACTAGTGGACACAAATACAAAGAGAAGGTCTTAAATGCAGCCTGAGAGAACAGATTACCTAACTGAGGAATAGCAGGCAGATGGACAAACCACTTCCCCGATAGCAACAGTTAAGGCCAAACACTATAGTGGAACAATGCTGAGAGAAAATAACTGTTAACCCAGAATTCTCTAAATCTAGTCAAACTCATTCACCAGTAAGCATAATTTTTGAAATTATTTGAAATTAATTTCTGAAATAATTTTCAGTCAAAAATTGAGTTTTCCAGTCATGTTTTATCACATAAAGAACTCCTCTGAAGTGTATTTTAGAAAGAGGAAGTGAGCCCATAAGAAAGGAACAAATCATAAAAAACAGTGTTGTTAAACTGTTAAACATACTGAAATTGTGACTGAATGAAAAGTAGGAATGGTAACGTCTGTTTTGAGTTTGCATAGCACTTCACGTTTATTCTGTCTTTTGATTTCTATGAGAGTCCTCTGAGGCCCTGGTTCTCAAGCTTGAGTGCACTTTGGTATCCACCTGCAGAGTTCTAAAAACCGCACCCAGGTTTGCCCCCACGGATTCTGCTGTAACTGTTACAGGGAACAGCCTGGGATTTTTTATATTTGTAAGATAGTTTATTTCTCTCGTGTGGCAGTTCCCATCTGGTATGCCAACTGTATTCCAGGAGGGCAATACAAAACCTAAGATACCTGCTGCCTTGTTCTTACATAGCTAGATTATGACCCTCATCTCTTTAGTTGAAAGGATTTTTTTTTAAACTCCCAGAGATTATAATGCACAGCAGTGTTTAAGAACCACTGCTTTTAGGGATTTAGCCAGGTAATACTGAACCTTAGAGAAGTGACTTGTTCAGCGTTTCATGGTAGGTATGTGGCGTCCATCAGGTCCAATTTCTTAAGTGTAGCATTTGTTTATTCTTTATTCTCATACTAGTTTGTGAAGTTGACAACAATGCCTTTACTCAAATGAAGTAAGACTGCACAGTTAAGTTAAAAACTAAGTTTAGATTAAATTTGGAAACTATACATTACTCTTAGAATCTTCAGTTTTTTAAAGGAAATTGTGAAATTATTTTTTAAGAATATGTAATTACCTAAGTTGAAGACGTACAGGTGATTATGTGGCAGGAAGCACAGTTCTTGATTTGTCAGTTTAAATGTATGTTTTTTGCTTCTTCAAAGTAGATAAAGCCAACTTAGTGGGAAATAATATTAAATAGCAAATATATTGAAAGCCATTAAGAAATCATGCTTCTAAAAGAAACATTTCACTAATGAATTTTTGCAAGAGCCTATAATGTTATCAGAAAACTTCTATTTGAGTTTTTAATTCTGTTCGATGCCTTGTACTGAGCTTTTCCTTTTTGATTTTTAGCAGGTTAAGGACAGTGGAGTGCACTGAGTTTTTATCTTGATGTTCAAGAAATCATGTTTTCATTTTTGAAGATGAAAACCCACATTCCACTTCAATTAACTATAAAAACTTTCTTTTCTGGTTTTAG
Seq C2 exon
ACCAACAGCAGCAGAACTGCTAAGGCACAAGTTTTTCCAAAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]