MmuINT0114259 @ mm10
Intron Retention
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119260050-119264883:-
Coord C1 exon
chr9:119264750-119264883
Coord A exon
chr9:119260099-119264749
Coord C2 exon
chr9:119260050-119260098
Length
4651 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CCTCTCCTTTCTGCTTTTAGGCC
3' ss Score
11.98
Exon sequences
Seq C1 exon
GTTTTAATGCTGACGCTCCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAGAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
Seq A exon
GTAAAATATTGGAAAATATGACATATCTCTTTTGATACTTAAATCGGGCTGGGAATCCCTAAGAATTACATTTGTATACACAATATTATGTGTATATTCTTAAATGAATGACAAACATTAGAAACATTCATAAAGGCCATCTTACAAGCTTGGAAGGGACTGAGTTGATTTCGTGTACTTATAAGTATATAATATATCTCAGTTGCCCAGATATTTCTTGATTCGTTTCTTAAAGCTATGAAATTATATTTGTGAGTTCTGTATTAGTAACAGGCCATGTTAATGGGCAAGTTTTTCTTTTTTCAACCTTCACTTGAAATATAACTGCCATTTACAATTTAATAACAAAAGGACTGTAACAACATATTTATATTTCATGTCAAATAATTTTGCTTTTTATGTAGGAAAGATTCTAGTAGTCAAAGTTTCAAATAGTTTCCTCGTTGGCTTTAGACACATTGATTGGTAAGCAGCAGATTCTTAACAAAGGGTGTTTATGTGTGGTGGTGTTGAGCAGCACTGTAGGCGAAATCAATGAGTAGAACCTATGCTTTGAGGTCACCCCATCCCTAGTCCTAGAGGTGGAACTTGACTCTGAGGATCATTGACTGTAACTGGGGGCTGCATCCCCACTGTGTTTTACTCTGTTTTCATGTGTGCATCAGCTTCCCACATCCACCACCTCCACAGCTACAGATTGATCTACTGTGGATCCAAGGACTCTGATCAGATTCCATCAGTGCTCAGCAGCACCAGCCTTTTCTTTGTCCACATTCCTTGAGCATCATAGTATACTTGGCATGGTAGCAGCTACCCTCATTAAGCTGGAGGGGGTATAAAGTGCAGGAGGGTCGCGTGGGTTCTACACAGATAACATTCCACTTAGATACAAGGGATTGAGCATCAGGGTTTTGCTGTTGGCAGAGGGTCCTGGAAGCAGTTCTCCTGGGATTCCACAGGCAGACTGTATTCCACTGTTTCTTAATACTGAAAGTTGTTTAATTCTGTTTTCTCTAAAGGTCTACAAAAGTAAAAGACTTAGACATCCTTGGTCATGTGTCTAGTGTATGTAATGGGGCTTCAGAATTTACTGTTGGAAATGTTGGAAAGGGTAAGGAAAACAGGCAGCCAAGTTCACGTTCATGGTTTTAGGATTTCTTCTGTTTTTCATCACTGGCTAAAACTGATAGGGAATTCTTTTGTTTCTGCCAAGTTAGCTGATAAAAAGACCCCCCCCCTTTTTTTTTTTTACAAATACCTAGAAGTAATATATAAAAATCCATCAAATGTAAAGATCCTTAGGTGCCAGAAATAGTGAAGAATATGTAAATTACAGTAGAAAGTCTAACTAATCCGGTGGCCACCAGCAGCACACTACTCAGTCTGATGTTCTACAAGGTTGAGTTTTTGACTCCATGCTGTGACTCTTGAAATTGGGACTGTGGGTCCACCTGGAGGAAATGTTCAGCTGAGTTTCTGCTTAGAGGACCGTCAGAAAATATCTTCCTCATTTATGCATATGAGTTTTTTTGCCTCTGTGTATATATATAGCACATACAAGAAGCTGCCCTTCTCAGTCATTTCCAAGAAGCAACAAAATCTCTCATTGTTTTGACTTTCCTTCCTACAGATCGAGAGTCTGAATTTGTACTCGCCACACTAAATGTGTACCCAGCACCTTAAGCAGAGAAATAACGATTGTTAGGCAGCTTCAGAAGTGCACTCGAACACCTGCCGACCCAGGTCCCATACATAGCTCTGGGCCCGACATGCCCGACTCAAGCTGCTGTCAGCTGTTCCAATGTAAGGTGAACTAGAGTTAGCATACAATAGCATTAGTTCTTCAAAGAATCAAGCAAGACTTTTAGAGCTGAAAGATTCAGATAAAATGTGTGGGCTGGACTCTTGATTTGCTCCTGACTGAATAAAGTGTGAAGAAAGAACTTAACAGTGAAGAGGCTTGGTGGACAGGCACCTTCTCCACTAAGTGATCATACAGCCTAACGAACTCCCGGAGCTGTGCAGTAAGAAAGGCGCATTGCCTCGTGAAGCTTTTCACCTCAGAGAGCCCCAGGCTGAGGAATATGCTATAGAATACTCAACCAGTATTTGTCAGAAGTGTTAAGCAAAGAAAAAAATTGAAAAGCATGACTGGTCAGAGTAATTAGACTTGGAGAACAGGTGTGATGGATGCCGTGGGTGCTCTGACAGACAGGCCTGTGGGAAACAGAAGAAATCAAAAAGAGCTGTACTTTCTACTTAGAGAGAATGTACTGGTAATGATTAGGTTGCTTCTTGATAACTGTAATTCAGTTACATAAAATGTTAACTTCAAGGAGCTAGTTAAGGATATGAAAGAATTGTATACTATCTTCTTCAATTCTTTTATAAGTCAATATGTGTGTGTGTGTGTATCTGGGAAGTATAGAATTAAGCATTAAGTATTTTAAGGTCAAATAACACAAAACACAACTCCATTAAACAGAAGAATTGAAAGAAAACAGCAAAACAACAAACTATTGACTGATTAACTATAACTAGCAGGTGCCTATGAACAATGAATGTGTGAGGGCATGTGCTGTCTGAAAACACACACACACACACACCGTGTGAGCCCGCACACCGTGTGTGCACACACGCACCATGCTCCATCTCACTTAGTTTTCACAGGATCCACAGCATTTTCCACTCCCTGCTTCACAAAGAAGAAACAGATCAGAGCATAGCCAGCCTTGTGCAATGTCTCCTGTAATAAAATGGGATGTTTAACCCGTATATACACAGTCACATGAGTAGTGTAGACTTCTCAAGGAGAGACTAGTGAGAATGGAGAAGTGATATTCAAATAACAGTGGAAATTAACCATGTTAACACAGGCATTAAGGAAGGACTAGGAGGATAAGAAGGTTAACGACCATCCATGGCTATTCAGCCAACTTTGACGCTAGGCTTGGATACACACTATTTACAGAAATAATAATAATAATAATGAAAAGATAAAACGGGCTTTCTAGCTCTTGAATCCCCATGTTAAAAACTGCCTGTCCCAAATCCTACCCAGCATGCCTCCTCTCCTACGTGCTCTCCTTGTGTAGCCTCAATTGTCTCCGAACCCAAGCGACCTCCTCTAGTTTCAGCGGTGAGGCCGGAACAAGTAGTGCTGAGTGAGGATAACTGTCAATTTTCCAGGCAGTCACATTCATATTATTCAAGAGTGAACTTGAAAGTAAGATAGTTTTTTACGTTAATTTAGACTTCACTCTAAAGTTGTACTTTAGAAAAAAGAAAATGGACCTGGAACAACAAAATGAACAGAAAGACGCTGTCCTGGGCAGCGCAGGCACTGCACCACTGAGAGAACACCACTGTTTAACTTCAGTCTGTCGGCATTTGCCATTTGCTCCTTCTGTCTCTGTTAACCTTCAGAAAGAAGCATGGGCTCAAGCTTGGCGTTTACTTGGAATTACCCGGGAAGGTGTAAGAACTACCAGCACCTCTGAGTGTGGTGGCGCTTGCACGCCTTTAATCCCAGCACTAGGGAGGCAGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCAGGGTGAAAATATATATATATAAATAAGTAAATAAAAGAACTACCAGTACCTGGCTCTTGCTCCCAAATACTGTGCTTTTGGTGAGGAACTGAAAGTAGCACCCAGGGGTTGTACTGCACAGTAGTGCTTAGAGCCACTGTGGAGGCTGAAGTTGTGCCCGAAGATACCTGCTTACCAGGCTTGTACAAGCCCTTGATACACACCTGTTCTGAGCACTGTTCTGTTCCTCTTAGCTTCTGAGAAATAGCATGGTCTAGCAGTCCATGGTAAGTACGTGGTAAGAGTAGGTATGGTCTTTGAAGAGTAAATTCTTTATTTTTAGTGGTCCTCTTTTAAAAGCTCGTAAAGTTGATAATGAAGAATTTACTCCAAACAAGATCATGCATGACTGAACTGAATTTTTGAAAATTGAAATTTTTTTCTGTTTTTTTTTTCCCTAATTTTTTTCTTACAGGGAAATTGAAACATCATAGTTGACTTAAAATTAAACCTGCTGGGCTTCTATGTAACAAAAACCAGTTGCTTGATTGCTTTTCTTCCAGTTTAAATGCATTTTTATGCCTTGGTAAAAGTTTTAGGTGGTTATTGTCTGGTTCCCTTAAAATGGTATAGCTAAATAGCAAACATTGGGAGTCCCTAAGAGTTCTCTTCTAGAAACAATAGTTTATTAATGAACTTTTCAAACATTCTACAATTCTGATTATCAGTTTTCTTATCCCCACTAACCCCAGGGGCTCCCCTGTGTAGCCATGGCTGTCTTGGAACTCACTATGTAGACCAGGCTGCCTCAAACTCAAGAGATCCTCCTGCCTCTGCCTCTGAGTGCTGGTATTAAAGGTGTCACCCAGCACCTGGCCACTCATTGGCACATTGCTATTTGCGTTTTTGTTCTACTCAGTGTTCTGAACCATTATTTTGATGTTTAGCAGGTGAAAGCAGAATGTATTGAGTTTAGTTAGCTGTCCAGGAAATAATTTCTAATTTTTGAAGATGGAAATTGACAATATGCTTCAAAACTAAAACCTCTCCTTTCTGCTTTTAG
Seq C2 exon
GCCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCCAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737:ENSMUST00000040853:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.187
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types