Special

MmuINT0114259 @ mm9

Intron Retention

Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119169168-119174001:-
Coord C1 exon
chr9:119173868-119174001
Coord A exon
chr9:119169217-119173867
Coord C2 exon
chr9:119169168-119169216
Length
4651 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CCTCTCCTTTCTGCTTTTAGGCC
3' ss Score
11.98
Exon sequences
Seq C1 exon
GTTTTAATGCTGACGCTCCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAGAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
Seq A exon
GTAAAATATTGGAAAATATGACATATCTCTTTTGATACTTAAATCGGGCTGGGAATCCCTAAGAATTACATTTGTATACACAATATTATGTGTATATTCTTAAATGAATGACAAACATTAGAAACATTCATAAAGGCCATCTTACAAGCTTGGAAGGGACTGAGTTGATTTCGTGTACTTATAAGTATATAATATATCTCAGTTGCCCAGATATTTCTTGATTCGTTTCTTAAAGCTATGAAATTATATTTGTGAGTTCTGTATTAGTAACAGGCCATGTTAATGGGCAAGTTTTTCTTTTTTCAACCTTCACTTGAAATATAACTGCCATTTACAATTTAATAACAAAAGGACTGTAACAACATATTTATATTTCATGTCAAATAATTTTGCTTTTTATGTAGGAAAGATTCTAGTAGTCAAAGTTTCAAATAGTTTCCTCGTTGGCTTTAGACACATTGATTGGTAAGCAGCAGATTCTTAACAAAGGGTGTTTATGTGTGGTGGTGTTGAGCAGCACTGTAGGCGAAATCAATGAGTAGAACCTATGCTTTGAGGTCACCCCATCCCTAGTCCTAGAGGTGGAACTTGACTCTGAGGATCATTGACTGTAACTGGGGGCTGCATCCCCACTGTGTTTTACTCTGTTTTCATGTGTGCATCAGCTTCCCACATCCACCACCTCCACAGCTACAGATTGATCTACTGTGGATCCAAGGACTCTGATCAGATTCCATCAGTGCTCAGCAGCACCAGCCTTTTCTTTGTCCACATTCCTTGAGCATCATAGTATACTTGGCATGGTAGCAGCTACCCTCATTAAGCTGGAGGGGGTATAAAGTGCAGGAGGGTCGCGTGGGTTCTACACAGATAACATTCCACTTAGATACAAGGGATTGAGCATCAGGGTTTTGCTGTTGGCAGAGGGTCCTGGAAGCAGTTCTCCTGGGATTCCACAGGCAGACTGTATTCCACTGTTTCTTAATACTGAAAGTTGTTTAATTCTGTTTTCTCTAAAGGTCTACAAAAGTAAAAGACTTAGACATCCTTGGTCATGTGTCTAGTGTATGTAATGGGGCTTCAGAATTTACTGTTGGAAATGTTGGAAAGGGTAAGGAAAACAGGCAGCCAAGTTCACGTTCATGGTTTTAGGATTTCTTCTGTTTTTCATCACTGGCTAAAACTGATAGGGAATTCTTTTGTTTCTGCCAAGTTAGCTGATAAAAAGACCCCCCCCCTTTTTTTTTTTTACAAATACCTAGAAGTAATATATAAAAATCCATCAAATGTAAAGATCCTTAGGTGCCAGAAATAGTGAAGAATATGTAAATTACAGTAGAAAGTCTAACTAATCCGGTGGCCACCAGCAGCACACTACTCAGTCTGATGTTCTACAAGGTTGAGTTTTTGACTCCATGCTGTGACTCTTGAAATTGGGACTGTGGGTCCACCTGGAGGAAATGTTCAGCTGAGTTTCTGCTTAGAGGACCGTCAGAAAATATCTTCCTCATTTATGCATATGAGTTTTTTTGCCTCTGTGTATATATATAGCACATACAAGAAGCTGCCCTTCTCAGTCATTTCCAAGAAGCAACAAAATCTCTCATTGTTTTGACTTTCCTTCCTACAGATCGAGAGTCTGAATTTGTACTCGCCACACTAAATGTGTACCCAGCACCTTAAGCAGAGAAATAACGATTGTTAGGCAGCTTCAGAAGTGCACTCGAACACCTGCCGACCCAGGTCCCATACATAGCTCTGGGCCCGACATGCCCGACTCAAGCTGCTGTCAGCTGTTCCAATGTAAGGTGAACTAGAGTTAGCATACAATAGCATTAGTTCTTCAAAGAATCAAGCAAGACTTTTAGAGCTGAAAGATTCAGATAAAATGTGTGGGCTGGACTCTTGATTTGCTCCTGACTGAATAAAGTGTGAAGAAAGAACTTAACAGTGAAGAGGCTTGGTGGACAGGCACCTTCTCCACTAAGTGATCATACAGCCTAACGAACTCCCGGAGCTGTGCAGTAAGAAAGGCGCATTGCCTCGTGAAGCTTTTCACCTCAGAGAGCCCCAGGCTGAGGAATATGCTATAGAATACTCAACCAGTATTTGTCAGAAGTGTTAAGCAAAGAAAAAAATTGAAAAGCATGACTGGTCAGAGTAATTAGACTTGGAGAACAGGTGTGATGGATGCCGTGGGTGCTCTGACAGACAGGCCTGTGGGAAACAGAAGAAATCAAAAAGAGCTGTACTTTCTACTTAGAGAGAATGTACTGGTAATGATTAGGTTGCTTCTTGATAACTGTAATTCAGTTACATAAAATGTTAACTTCAAGGAGCTAGTTAAGGATATGAAAGAATTGTATACTATCTTCTTCAATTCTTTTATAAGTCAATATGTGTGTGTGTGTGTATCTGGGAAGTATAGAATTAAGCATTAAGTATTTTAAGGTCAAATAACACAAAACACAACTCCATTAAACAGAAGAATTGAAAGAAAACAGCAAAACAACAAACTATTGACTGATTAACTATAACTAGCAGGTGCCTATGAACAATGAATGTGTGAGGGCATGTGCTGTCTGAAAACACACACACACACACACCGTGTGAGCCCGCACACCGTGTGTGCACACACGCACCATGCTCCATCTCACTTAGTTTTCACAGGATCCACAGCATTTTCCACTCCCTGCTTCACAAAGAAGAAACAGATCAGAGCATAGCCAGCCTTGTGCAATGTCTCCTGTAATAAAATGGGATGTTTAACCCGTATATACACAGTCACATGAGTAGTGTAGACTTCTCAAGGAGAGACTAGTGAGAATGGAGAAGTGATATTCAAATAACAGTGGAAATTAACCATGTTAACACAGGCATTAAGGAAGGACTAGGAGGATAAGAAGGTTAACGACCATCCATGGCTATTCAGCCAACTTTGACGCTAGGCTTGGATACACACTATTTACAGAAATAATAATAATAATAATGAAAAGATAAAACGGGCTTTCTAGCTCTTGAATCCCCATGTTAAAAACTGCCTGTCCCAAATCCTACCCAGCATGCCTCCTCTCCTACGTGCTCTCCTTGTGTAGCCTCAATTGTCTCCGAACCCAAGCGACCTCCTCTAGTTTCAGCGGTGAGGCCGGAACAAGTAGTGCTGAGTGAGGATAACTGTCAATTTTCCAGGCAGTCACATTCATATTATTCAAGAGTGAACTTGAAAGTAAGATAGTTTTTTACGTTAATTTAGACTTCACTCTAAAGTTGTACTTTAGAAAAAAGAAAATGGACCTGGAACAACAAAATGAACAGAAAGACGCTGTCCTGGGCAGCGCAGGCACTGCACCACTGAGAGAACACCACTGTTTAACTTCAGTCTGTCGGCATTTGCCATTTGCTCCTTCTGTCTCTGTTAACCTTCAGAAAGAAGCATGGGCTCAAGCTTGGCGTTTACTTGGAATTACCCGGGAAGGTGTAAGAACTACCAGCACCTCTGAGTGTGGTGGCGCTTGCACGCCTTTAATCCCAGCACTAGGGAGGCAGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCAGGGTGAAAATATATATATATAAATAAGTAAATAAAAGAACTACCAGTACCTGGCTCTTGCTCCCAAATACTGTGCTTTTGGTGAGGAACTGAAAGTAGCACCCAGGGGTTGTACTGCACAGTAGTGCTTAGAGCCACTGTGGAGGCTGAAGTTGTGCCCGAAGATACCTGCTTACCAGGCTTGTACAAGCCCTTGATACACACCTGTTCTGAGCACTGTTCTGTTCCTCTTAGCTTCTGAGAAATAGCATGGTCTAGCAGTCCATGGTAAGTACGTGGTAAGAGTAGGTATGGTCTTTGAAGAGTAAATTCTTTATTTTTAGTGGTCCTCTTTTAAAAGCTCGTAAAGTTGATAATGAAGAATTTACTCCAAACAAGATCATGCATGACTGAACTGAATTTTTGAAAATTGAAATTTTTTTCTGTTTTTTTTTTCCCTAATTTTTTTCTTACAGGGAAATTGAAACATCATAGTTGACTTAAAATTAAACCTGCTGGGCTTCTATGTAACAAAAACCAGTTGCTTGATTGCTTTTCTTCCAGTTTAAATGCATTTTTATGCCTTGGTAAAAGTTTTAGGTGGTTATTGTCTGGTTCCCTTAAAATGGTATAGCTAAATAGCAAACATTGGGAGTCCCTAAGAGTTCTCTTCTAGAAACAATAGTTTATTAATGAACTTTTCAAACATTCTACAATTCTGATTATCAGTTTTCTTATCCCCACTAACCCCAGGGGCTCCCCTGTGTAGCCATGGCTGTCTTGGAACTCACTATGTAGACCAGGCTGCCTCAAACTCAAGAGATCCTCCTGCCTCTGCCTCTGAGTGCTGGTATTAAAGGTGTCACCCAGCACCTGGCCACTCATTGGCACATTGCTATTTGCGTTTTTGTTCTACTCAGTGTTCTGAACCATTATTTTGATGTTTAGCAGGTGAAAGCAGAATGTATTGAGTTTAGTTAGCTGTCCAGGAAATAATTTCTAATTTTTGAAGATGGAAATTGACAATATGCTTCAAAACTAAAACCTCTCCTTTCTGCTTTTAG
Seq C2 exon
GCCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCCAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-Oxsr1:NM_133985:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.161 A=NA C2=0.294
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006920=Pkinase=FE(16.0=100)

							
A:
NA

							
C2:
PF0006920=Pkinase=PD(4.4=70.6)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000042155





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000117327
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:38224705-38229686 
ALTERNATIVE
HsaINT0119205
(OXSR1)
Human
(hg19)
chr3:38266196-38271177 
ALTERNATIVE
HsaINT0119205
(OXSR1)
Rat
(rn6)
chr8:127949798-127954557 
LOW PSI
RnoINT0106342
(Oxsr1)
Cow
(bosTau6)
chr22:11734446-11737631 
LOW PSI
BtaINT0106599
(OXSR1)
Chicken
(galGal4)
chr2:4897365-4899271 
ALTERNATIVE
GgaINT0091650
(OXSR1)
Chicken
(galGal3)
chr2:4826895-4828801 
LOW PSI
GgaINT0091650
(OXSR1)
Zebrafish
(danRer10)
chr24:19937679-19938408 
LOW PSI
DreINT0109314
(oxsr1b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"