GgaINT0091650 @ galGal3
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4826761-4828850:+
Coord C1 exon
chr2:4826761-4826894
Coord A exon
chr2:4826895-4828801
Coord C2 exon
chr2:4828802-4828850
Length
1907 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTTCTCTTTTTATTGACAGACC
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTTTTAATGCTGACACTACAAAATGATCCCCCGTCTTTGGAAACCGGTGTGCAAGATAAGGAGATGCTGAAGAAGTATGGGAAGTCTTTTAGGAAGATGATTTCATCGTGCCTACAAAAAGACCCTGAAAAAAG
Seq A exon
GTGAGATTTGATAACAACAAAGTAAACGTAAGCAAAAGCAACCCTCAAGGTTCATTCTATTTCATTTTTTAAAGCGGTATGCTCTCTGCTTCTTCAGCCTTGTGAATGCAGCAATGGCTGTCCTTATTTTTAAGGATAAATGTCTGGCGTTGTGCCTGGCCAGGGCACACGCCTTTCATTTGGGTTAATGAGTGCATCCCAGTCCCTGCTAGCGTAGGGCCCTTCTCCCCCTTGCCACTTCCAACAGGTGACTGCAGTTCATGTTTTGTTTCTCCTCAGAACTGCTCTGTGTTTATAAACCAGAAATTACGTGTTGGGCAATGTGTGCTTATTTGTGAAGCTTTGCAAATAAACTTCTTAAAACTTGCCAGCGCAAAGAAGGCTCCCAGTGTAGTTTTGACTTGATTAATTATAAGTCGTGTTTATTTTGGGGGGAGAACATCAGGAAAAACAAGTGGCAAGTTTTACCTAACGTGTTTTCATCAATACACATTGCTGAAGTCAACTGATGGCACTTTCAGTCTTCTTTGCAACTGCAGCCTGACTGCTCAGCGGTGGTAGAAGTATTGACCAGGATGTGGTGCATATGTTGTGGTTGGTTCCCAGGACAGCACTGTGTCGCTATGTGATGGCACTGTCTGAAGCCACACGAAGCTCTGCCTGTCTGGCGCTGTTTAAAACCCACAGCCCATCACATGGGACAGCTCAGAAGATGGTGGAAGGAGTGTTGGACCTGCAGTAAAAATAGTATTCCTTAAAAATGCAAAGCAAAAACAAAAAAAAAGTATTTCCACAGGTCATTTTTTTTTAATATTTATACTACTTAATTTTCTTTTTTCTCCCTAAGCAAGCTAATTCTGGAAAGGGAAATGTCCCTTCATAAAATACAAATGGTGGAGATATTTTTCCAGTTCCTTCCTGTGCCGGATCCTGGAACAAAGGCTTCTCACATGTCATGAGATGGGGGTGGGGGGGGCTCACTCTCTTCTAACAATCTTTACATTTGAAATGCTAAAGGAGTCCAGTAGAGCGCTTGATAAATGCACATAACACATTTTTCCCCCCAGCTTGATATTATTCTTTTTCATTTTTCAAGCATGTCCTATCCCTGCAGGTTAGAACGTGTGATTAGAATTAAACATAATTACTTTCAATCGTGGCGTCCCCCATCTCTCTTCTCAAGCACCACTAACAATCACTGTAATCATCTTTACTTTGGGAGCAGGAGGTCTGCCCGTGAGGAGCAACCTGCAAAATCAGATATGTTTATGCAAGCATACAGGCTGTTAAGGAGAAGTTAGTGAATTGCCTTTATGTTATTTTTGCTCGCTTGTAACAAGGGCTACCCTGCTATAAGATGAGTGACTTCTCTGGCATAGTCTGAAGTGAATGCCCTTTTTAAGTCAGGAACCACACAATGTAGGCAGTTTGCAGTAGGGTAAGTGTTGTGAGCTGCTGCTTTCTCGTGGAGGTCTGAGTTTTTAGAAAACTGAAGTGACCAAGGAGGGTGGCTGTCTTTTACTTTGCAGTGTTTGTCCTAAAGCATAGCTTAAAGGGGAAGAGCTAATTACACACGCATATAATAAAGCATCTTTGCAATCAGTCTGTCACTTGCACATGGTAGGTACTGCACTCCTTCAGTAGGTGATGATCCTTTGTCTCAATTCTCAGCAAATTGCTTCTTTGATTGTATCAGCTAGGCTGTAAGAATGGGAACAGGGCTTTGTGCTGAGTGAACTCACAGTAGGCTTTGCTCAGAATATACTGACACTCGAAAGGTTGTTTGGTTACACTGACTAACTCCTAGGGCAATTGTGCAGGAGGTGATGCCCTTATGAGATGCAGCAACCTGTAAGACTTGAGTTGAAATGTACCATTTATAGTGTTTCTTCTCTTTTTATTGACAG
Seq C2 exon
ACCTACAGCAGCAGAACTTTTAAGACACAAATTTTTCACGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTAATGCTGACACTACAAAATGA
R:
TTTGCTTTCGTGAAAAATTTGTGTCT
Band lengths:
182-2089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]