RnoINT0106342 @ rn6
Intron Retention
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127949749-127954691:-
Coord C1 exon
chr8:127954558-127954691
Coord A exon
chr8:127949798-127954557
Coord C2 exon
chr8:127949749-127949797
Length
4760 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ACTTTCCTTTCTGCTTTTAGACC
3' ss Score
10.8
Exon sequences
Seq C1 exon
GTTTTAATGCTGACACTCCAGAACGATCCTCCTTCTTTGGATACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
Seq A exon
GTAAAATATTAGGTAAACATGACATGTGTGTTCTGATACGTACAACTGTGTGTGGGCGCACCAAGGGTTACCTTTGTCATGTACACAGTATTATGTGTGTATTCTTAAAATGAATGACTCACCAGTGCTGGAGACAGCCAGGAAGGCCACTGCACAAGCTGGAGGGGCCTGAGCTGATGTCGTGCACTCACAAGTGTATAATAGACCTAAGTTGCCCAGATATTTCTTGATTAATTTCTTAAAACTGAATTTATATTTGTGAATTCTGTATTAGTAAAATGCCATGTTAATGGGCAAGTTTTTCTTTTTTTCAACCTTCACTTAAAAGTGTAACTGCCATTTACAGTTTAATAACAAGAGGAGCACAACCACACACTTATATTTCCATGAAATAATTTTATTTTCCATGTAGGAAAGATTTTGGTCATCACAGTTTCAAGTAGTTTCTCGTTGGCTTTAGACACTGAGTGGTAAGCAGCAGGGTCTTAAATAGGGTGTGTGTGGTGTTGAGCCACACTGTAGGCGAGATTACTGAGTCGAGCCTTATATTTTTGAGGTCACCTCATCATAGTCTCGAGGTGGAACTTGACTCTGAAGATCATGGACTGTAGCTTGGGGCTGCATCTTCACCCTTCTTAACTCTGTTTTCATCAGCTTCCCATACCCACCGCCTCCACAGCTACAGGTTCACCCGCCCATCCTTTGCCCGTGGGTCCAAAGCAAACTGATCACATTCCCTCAGCATCAGCAGCATCAGCTTTTCCTCGGTCCTCAGTCCCTGAGCGGCACAGTGCACTTGGCACAATGGCGGCTACGCTAGTCAGGCTGGATGTGGTGTAGCGTGCTGGAGGGCCGTGTGGGTCCTACACAGAGACCATTCCACTTAAATACAAGGGATTGAGCATCAGAGCTTTGCTGTTGGCAAAGGGGTCCTGGAAGCAATTCTCCTGGGATACCATGGGAAGACTGTATATTCCGCTAAGTTTCTTAGTACTAAAAGTTGTTTAATTTTGTTTTCTCTAAAGGTCGACAAAAGTAAAAGACTTTGACATCCTTGATCATGTGTCTAGTATATGTAATGGGGCTTCAGAATTTACTGTTGGAAATATTGGAAAGGGTAAGGAAAACAGGCAGCAAAGTTCATGGTCATGGTTTTAGAATTTCTTCTGTTTCCATCAGTGGCTAAAACTGATAGGGAATTCCTTTGTTTCTGCCAAGTGAGCGACAAAAAGAACACTTTCCTTTTTCTTTTTCTTTTCCTTTTTTTTTTTTACAAATCCCTGAAAGTAACAGGTAAAGAATCCATCCATGTAAAGATCCTTAGATGCCAGGAATAGTGAAGAATACACAAGTTACAGACGAAACTCTGACTCATCCAGTGGCCACCAGCAGAACACTGCTCAGTCTAATGTCCTAAAACGAGGTTGTTTTTGACTCTGATGCTGTGACTCTTGGAATTGGGACTGTGGGTCCACCTGGAAGAAATCTTCAGCTGAGTCCCTACTTAGAGGACCATCGGAAAATATCGTCCTCCTTTCTTATAAATTGTTTAGTTTATGCATATGAGTTTCTGCCTCTGTATAGTACAAGAAGACTCCCTTCTTGTCATTTCCAAGAAGGAACAGACTCTCATTGTTTTGACTTTACTTCCTACAGATTGAGAGTCTGAATTTGTATTGATCACACTAACTGCATACCCAGCACCTCTCTGGGCTTAAGCATGCTGTTAGGCAGCTACAGAAATGTATTCGAACACCTGCCAATCCAGGTCCCATAGCTCCTGGGACCAACACACTCAACTCAAGGTACTGTCAGCCATTCAAGCTGCAGCACACATGGGGACAGTGTAAGGTGAACTAGAGTTGGCATTCAGTAGCATTAGTTCCTTAAGAAGATTGATAATGCAGCGGTACCCGAAAGTGTATATAAATTTTCAAATTTATTAAAACCATAAATCAAAACCATGGGAAAGGACTTGACCAAAGAGTCAAGCAAGACTTAGAATGGAAAGACGCAGTTGAAATGTGTAGGCTGGACTGTGATATGCTCCTGATTGAGTAAAGTGGGAAAAAGGAGAAGAACTTGACGGTGAAGGGGCCTGGTAGACACCTTCTCCAGTAAAGGATCAAAGTTACGACTTAATGAAGCTCTGGAAGCGGTGAAGCACGAAGGGCGCGTTGCCTCGTGAAGCTTTTCACCCCAGAGAGCCCCAAGCTGAGGAGTGTGCTACAGAATACTCGACCAGTATTTGTCAGAAGTATCAAGCAAAGGAAACAATTGAAAAGCATGAGCGGTTAGAGTAACTGGACTCAGAGTAGATGTGAAGGGGATGCCACAGGTGCTGTGACAGAAGGGCCTGTGGGAACGGAAGAAATACGAATGAGATCTGTGGTTTCTACTTAGATTACACTGGTGTTAATGACTAGGTTACTTCTTGATGACTGTAATTTGCTTACATAAAATGTTAGCTTCATGGAGCTAGTGAAGGTTATGGAAGAATTGTGTACTCTTTTCAACTTTCATTCATAGAGATAGAGAGAATTAAGCATTGTTTAAGTATTTTAAGGTCACATAACACAAAGCACAACTCCATTAAGAAATGAAAGAAAACAACAAACTTAGCAGGTGCCGGGGGAACATGTGAGCACACACTCTGTGAGCGCATGAACGCGTGTGCTGGCTCATTTAGTCTTCACAGGCATCCACCAAAACAGCACTTTCCATTCTCTGCTTCATAAAGGAAGAAACAGATTGGAGCTTAACCAGCCTTGTGCAAAGTCACCTCTAATATGGGATGTTCAACCTGTACAGGTCACACAAATGTACGAGTGTAGACTTCTCGAGGAGATTAGTGAGAATGAAGAAGTGATATTCNNAAAATAACAGGCCTGCCAGCCTAGCATTAGGGTAGGACTAGGAGGGTGAGAAAGTTAGTGATCATCCGTGGCTGTTATCTCTTGAGAGAGGCTAGCCTTGGATACATGAGACTTAAAGAAATAAAATAAATAAATTAATAGTAATAACAACAACAACAACAAAGTGGGAAGATAGAATGGGCTTTCTAGTTCTTGAATCCCCATGTTAAAAACTGTCTGTTCCAAGTTGCACCGCAGGCCTTCTCCTGGCGCACTCCTTGTGTGTAGCCTCAGTGTGTCCGAACCCTAACCCTGACTGTCACGGCGGGGGCGGGTGGCAAGGCCAGAACAAAAGTAATAATAACTAGAGAATAATAAAGAATGACTGAGCTCTCCAGGTGGTCACATCTGTATTGTTCAAGAAGATCCTTTTTTTGTAATAATTTAGACTTTTACTCTTTCACAAGTTTTACTTTAGAAAAAAGGAAATGGATCTAGAACAAAGAAATGAATAGTAAGATGCTGTTTTGGGCACAGAAGGCATCACACCATTGAAATCTTTAACGAATTAAAAAATAAGAATGTCACTGTTTAATTTCAGTTTAAAGGCATTTGCTATTTACTTATTTCCTATCTGTATTAATCTTTGGAAGCACTAGTTCTCCCGCTTGAAGTTTACTTGGAACTTCCTGGGAAGGTTTAAGAACTACCAATACCTAGTCTTGGTCTCAAATACTATGCTTTTGGTGAGGGATTGAAAACACCGCCCAGGCGGGCTGAGGTACCGCCGTGTTTAAGAGGCGCTGTTGAGGCTGAGGTTGCAGTCAGAGGGACATGCTTACCGAGCTTGTACAAGCTCCTCTGCACATCTGCCCTGAGCAGTGTCCTGCGCCTCTTTAGCTTCTGAGAAATAGCAGTGTAAGCATTCCACAGTAAGCACGTGGTAAGAGTAGGTGTGTCTTTGAAGAGTAGATTCTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTGAAGAGTAGATTCTTTATTATTAGTTAGCCTCTTTTAAAAGCTTATAAAGTTGATAATGAAGAATTTATCCCAAACAAGATCATGCGTGGCTGGGCTTAACTTAATTTGGGTTAAATTTGGAAAATTGAAAATTTTTTCCTTTAAAGAGAAATTGAGACATCTCTAAGAATCCATAGTTACCTTAAAATTAAACCTGTTGGACTGCTATGTAACAACAACCAACTTTCTGATTGTTTTTCTTCTAGTTTAAATACATTTCTATGCTTTGGTAAAACTTTTAGGTAGTTATTGTCTGGCTTCCTTAAAATGATATTGTTAAATAGCAAATATTGGGAGTCCCTAAGGATTCTCTTCTGGAAGCAGTAGTTTACTAATGAACTCTCCAGACATCCTATAATTTCCATAATCACTTTTCTCTACCCCCCTTACCCCCAGGGGTTCATCTGTATAGCCCTGGTTGTCCTCACACTCACTCTGTAGATCAAGCTTGCCTCAAATTCACAAACTCACCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGTCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTGCCCGAGGGCTGGAATGAGGGCGTCCCACAGCCTGGCACGTTTCTCTTGGAGCTTTTGCTCTCCCCAGTGTCCTGCACCAACCTGATGCTGATGTTGAGCAGTTGAAGGAATGTGGAATGTGCTGAGGTTGTAGTTAGCTCTCCTGTAAACAGTTTCTCAGTTTCGAAGATGGAAATCCACAATATGCTTGAAAACTAAGAACTTTCCTTTCTGCTTTTAG
Seq C2 exon
ACCAACAGCAGCAGAACTGTTGAGGCACAAGTTTTTCCAGAAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136:ENSRNOT00000018056:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]