BtaINT0109184 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:6965631-6968951:+
Coord C1 exon
chr6:6965631-6965806
Coord A exon
chr6:6965807-6968891
Coord C2 exon
chr6:6968892-6968951
Length
3085 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CTTCTGTTCTCACCCCATAGGTT
3' ss Score
12.03
Exon sequences
Seq C1 exon
GGGTTTGCCAACTTGTTAATAAGATGGAGGAAACCACTGGCAAAGTTAAGGCTTTCAACCGCAACGATGAACAGTTTCTGGAAGCTTTCGTCATCTTTTGTGGCTTGGGGATCCAGAACACACAGATGTACGAAGCAGTGGAGAGAGCCATGGCCAAGCAAATGGTCACGTTAGAG
Seq A exon
GTGGGCTGCCCCTGCAGGACGCCTCAGGCTCCCTGCGAGCACTCTCGCCCGACCCCTCCCTGCGGCAGCGCTCGGTGTCTGTGACGTCACTGCGACCATACGAGAACCACGTGCTTCCTCTCTCCTCACTTAAACAACCGAGGAAACTGAGGCCCAGCATACTTTAGAAACTTGTCGAAGGTCATACGACCACATCAAAGCTCAGGCCCCGGGTCCCTTCTGTCCTCTGCTTTCTCGGCCGAAAGCGGTCCTTAGACCTTAGTGAGGAGCCGCTCACACTGATGATAGTCCTCCGTGCCCTGTCCTTTCTCCATTGCCTGAGCCTCCCTATCTCTCCTCGTGAGCAGCTGTATTCACACAGCAAAAAAACAAAACCAGATATCACAAGCACTTAGAATCAGAAATGAGGAAAAGGGAAAACTTCCAAATTACAGATTTGTGGATCTTGAGAAAATTCTGATTCAGTAAGTCCTGGGTGGAGGCTGGGAATCAGTGTTACTACCAGCACAGCCCCGCTTTACCCCGACCAGGTGATTCTGAGTGTGAACTACTGGCCTGGGGACTGGCCTCAAACCTGACTCCCTCCCAAGCAGATTGCGTCTACCCACCTGGGCCAGCCTTCTCCAGATGTGTCTCACTGACTCCCTGAAAACACTTTGTGTAAGATGGAAATTTCTTACATCATAGACCAGTCTAGGGAATTAGACTTCAGAAAGGGCATTCCTTAGTCATTCACACACTGGTGTGAAATATATTTTAGTGTTTGCCTACTTTTAGCCAGTAGAGATCAGTAGGAATCAATGTTTGAGTTATGGATTGTAACTTTTCCTCCACCCCTTAATAAATAAGAGCTAGAAAGATATGTAAGTCAAGATTTACCAGTAACCAAGATGGTATACTTTCTAATGTGAATATAAAACTCTAAATAGTTTTAGTAAAGTACTAATATAAGAGACTTTGGATTAGAAATCAGTAGAAATCTGTTTCAAATACACACACACACAAGTATACATATATTTTAAATTAAATGTATGCATACATATACATATATACAATTTTTAATACAATTTTTTACTGTTTCCATGACTACTGAAGAATTGACTCTAAGCCAGCTATCAATTAGAAATTAATCTCTTTTTAAACATACTTCCTATTTGGAAAATTTCAAACATAATGCTGAAGTAGAGAGGATAGCTAAGGAGCCCCCATGTCTTCATTAGCTGTCCTCAGTTGACCTGTGGCTACTATCATTCCATCCATACTCTAGCCCACTTCTCTGCACTCTTCTTCCTTATTAATCCACTGATTACTTTGAGACAAATCCCAGGTATAATTTTGTTCAAACTTTCTGAATATTTTCCCCGTTGAGATTTGCTTCTATTTTTACACTATAGTTTTATTTCAGTTAAAAATGAGTACTTCTACTTTCACTTAGTATACCCATTTTCCAATTTCAATTCATTATAGGAAATCGTATCTGTGATCACCAAGTTAACCTTGAAAAAATTTTCTCCCAAGGCATTGGATAAAACCCAGGGACATAAATGCCTTATGTTTTCTTATGACAGGGAATTATTTTCACCTAGAAGACATCAGTATAATGACAGTAAAACAACAGTAAATAGCTAACCTTTATCAAAGGCTTACTCTGTGTTCTAACATGCATTAACAAAAGTTAATCCTTACAACACAATGAGTGTGGTGCTATTTTTATCTTCAGTGTGTGGCAAAATTAATTTTTTAAACTTAGCATGTCATATTATTCCTTTATTCATTTGTCCGTGTTGCATTGCATTGGTTTATAGTAGACTAGTTCAGGGTCGCCGTCTTAGCCTTCCTCAACAAACCACCTCCCTGGTGTCAACGGCAGGTTAGCTGTGACCCGTCAACTTCACGGCAGCGGGAAACAGCAGCTCTGCGGTTCCTTAGGTTTCCTAGTGATTAATGCTTCAAACAGTAAGACAAGTCACATGTATTACCATAGTGTAATATTCTGAATCACAGTACATAGGCATATTTACCATTTGGCTTTAGATTTTTAATTGCTTACAATTTTAAAAACTAGTTAAGGAAAGCTGGTTTGGGCCACTGAATTACTTGACTTGCCATTTAAAGTCTGAAAATGAGGTACCTTTTTATCACTGACCCTAAAACTTTAAGAGATTTTAGTAAATCTGTGTTAACTCTGTCAAAAAGGAACTTTTAAAAATATTTAATATGATAAACAATTTAACATATAATCACTACCATGGTTTAGAAGAACATCTAAAATATTATCCCATCATTTGGAGTTATTGGTTTTGAAAATGGGAATTAATGATTCACATGTTAAGTTATAGGAAGATAGTAAATCTGCCTTACTATCTTGTAACTCCACTAGGATGGTGAAAAGTGTACAAGACTAGGAGATGAAAGCTGGGTCCCAGGCCCTCTTCTCACTGGGTGTGAGCTCACAGCCAGATGATGAGAATCCCTGAGCCTAGGTGTCCTGTGCTGTTAACAGATGAATTTATAGGCCACTTCTGCTCTTCTCAGTTCTTGAATTCTACGAGTGGAAAAGTATCCTTAAATCTGTCTGACATTTATCTCTCTGCTATGCCGTTTTTCCTTACGAATTCTGCAGTGGTTACAGGCCTCATCCAAGAGCCACTTCCAGACTGCTTTCTTCCTAAATATCGACATTAAAATGTCAGCTTATGCAGAAGTCTTTTATCTTGATTCAGTACACCAGTAAAATAACTAAAGTCAGTATTTTTGTTTAAGAAAAGCAACACAGAATTTTCTGCCAAGTTTGAGCTGATAGTGTGACTTATAAATAACGTGTTTGTTGTATCAACGTTGTCAGAGGAAAAGTGACAGTTTTCTTTGAACACAGGGAGTATAACTTTCTGTTTCCATAAGAAGCATTTGAATAAAAACCTGAGATTTTCTCTCTGTTGAAGAAAGCAGAAAAGAAAATACAATGTTCTGAGGAGTCTAGATACCTCTGCAGGAAGGCTTAGGAGAATCCCAGGCTTGAAGTTGTGGTCTGTGTTGGGTGTTCCTCTCTTGTCTAACATGCATTCCTTCTGTTCTCACCCCATAG
Seq C2 exon
GTTCTGTCTTATCATGCTTCAGCTGCAGAGGAAGAAACCAGAGAGCTGCAGTCCTTAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888:ENSBTAT00000014479:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(23.4=62.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]